New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA 3856874 =43 (1.020)5 (0.130) 5/260 4.9 11.4% intergenic (+10/+37) yidI/yidJ inner membrane protein/sulfatase/phosphatase superfamily protein
?NC_000913_3_hsa_tpiA 3856909 = 38 (0.980)intergenic (+45/+2) yidI/yidJ inner membrane protein/sulfatase/phosphatase superfamily protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCGCTGGATGGGGGCGTTTCGTCCACGTCCACAAGATGGCTATTCGCCAGTTGTACGCGACTATGACACCGGCCTACCGACACAAGGGGTGAAGGTGGAGGAGAAAAAACAGAAGTTCTGACGATAATGCCCGCTGATGATCACCCGGCGGGCATTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_hsa_tpiA/3857031‑3856874
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggcattatCGTCAGAACTTCTGTTTTTTCTCCTCCACCTTCACCCCTTGTGTCGGTAGGCCGGTGTCATAGTCGCGTACAACTGGCGAATAGCCATCTTGTGGACGTGGACGAAACGCCCCCATCCAGCGCGGCCGTGCATCTTTACGCC  >  NC_000913_3_hsa_tpiA/3856909‑3857050
                                                                                                                                                                                                                                                                                                            
GCGCTGGATGGGGGCGTTTCGTCCACGTCCACAAAATGGCTATTCGCCAGTTGTACGCGACTATGACACCGGCCTACCGACACAAGGGGTGAAGGTGGAGGAGAAAAAACAGAAGTTCTGACGATAATGCCCGCTGATGATCACCCGGC                                                                                                                                                         >  1:254802/1‑149
    TGGATGGGGGCGTTTCGTCCACGTCCACAAGATGGCTATTCGCCAGTTGTACGCGACTATGACACCGGCCTACCGACACAAGGGGTGAAGGTGGAGGAGAAAAAACAGAAGTTCTGACGATAATGCCCGCTGATGATCACCCGGCGGGC                                                                                                                                                     >  2:207321/1‑149
     GGATGGGGGCGTTTCGTCCACGTCCACAAGATGGCTATTCGCCAGTTGTACGCGACTATGACACCGGCCTACCGACACAAGGGGTGAAGGTGGAGGAGAAAAAACAGAAGTTCTGACGATAATGCCCGCTGATGATCACCCGGCGGGCA                                                                                                                                                    <  2:530905/149‑1
                                                                                   AAGGGGTGAAGGTGGAGGAGAAAAAACAGAAGTTCTGACGATAATGCCCGCTGATGATCACCCGGCGGGCATTATCGTCAGAACTTCTGTTTTTTCTCCTCCACCTTCACCCCTTGTGTCGGTAGGCCGGTGTCATAGTCGCGTACAAC                                                                      >  2:450469/1‑149
                                                                                                 GAGGAGAAAAAACAGAAGTTCTGACGATAATGCCCGCTGATGATCACCCGGCGGGCATTATCGTCAGAACTTCTGTTTTTTCTCCTCCACCTTCACCCCTTGTGTCGGTAGGCCGGTGTCATAGTCGCGTACAACTGGCGAATAGCCAT                                                        <  1:450469/149‑1
                                                                                                                AAGTTCTGACGATAATGCCCGCTGATGATCACCCGGCGGGCATTATCGTCAGAACTTCTGTTTTTTCTCCTCCACCTTCACCCCTTGTGTCGGTAGGCCGGTGTCATAGTCGCGTACAACTGGCGAATAGCCATGTTGGGGCCGTAGAa                                         >  1:444162/1‑148
                                                                                                                              ATGCCCGCTGATGATCACCCGGCGGGCATTATCGTCAGAACTTCTGTTTTTTCTCCTCCACCTTCACCCCTTGTGTCGGTAGGCCGGTGTCATAGTCGCGTACAACTGGCGAATAGCCATCTTGT                                                   <  1:388173/125‑1
                                                                                                                              ATGCCCGCTGATGATCACCCGGCGGGCATTATCGTCAGAACTTCTGTTTTTTCTCCTCCACCTTCACCCCTTGTGTCGGTAGGCCGGTGTCATAGTCGCGTACAACTGGCGAATAGCCATCTTGT                                                   >  2:388173/1‑125
                                                                                                                                                   GCGGGCATTATCGTCAGAACTTCTGTTTTTTCTCCTCCACCTTCACCCCTTGTGTCGGTAGGCCGGTGTCATAGT                                                                                >  1:416520/1‑75
                                                                                                                                                   GCGGGCATTATCGTCAGAACTTCTGTTTTTTCTCCTCCACCTTCACCCCTTGTGTCGGTAGGCCGGTGTCATAGT                                                                                <  2:416520/75‑1
                                                                                                                                                       GCATTATCGTCAGAACTTCTGTTTTTTCTCCTCCACCTTCACCCCTTGTGTCGGTAGGCCGGTGTCATAGTCGCGTACAACTGGCGAATAGCCATCTTGTGGACGTGGACGAAACGCCCCCATCCAGCGCGGCCGTGCATCTTTACGCC  >  2:17883/1‑149
                                                                                                                                                                                                                                                                                                            
GCGCTGGATGGGGGCGTTTCGTCCACGTCCACAAGATGGCTATTCGCCAGTTGTACGCGACTATGACACCGGCCTACCGACACAAGGGGTGAAGGTGGAGGAGAAAAAACAGAAGTTCTGACGATAATGCCCGCTGATGATCACCCGGCGGGCATTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_hsa_tpiA/3857031‑3856874
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggcattatCGTCAGAACTTCTGTTTTTTCTCCTCCACCTTCACCCCTTGTGTCGGTAGGCCGGTGTCATAGTCGCGTACAACTGGCGAATAGCCATCTTGTGGACGTGGACGAAACGCCCCCATCCAGCGCGGCCGTGCATCTTTACGCC  >  NC_000913_3_hsa_tpiA/3856909‑3857050

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.