mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_hsa_tpiA | 4,296,042 | 0 | C | T | 24.6% | 92.7 / 34.4 | 65 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 72 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | 4542664 = | 35 (0.730) | 10 (0.220) | 10/268 | 3.8 | 24.2% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_hsa_tpiA | 4542978 = | 30 (0.670) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 4136014 | 90 (1.880) | 5 (0.110) | 5/268 | 5.8 | 5.4% | intergenic (+17/‑76) | katG/yijE | catalase‑peroxidase HPI, heme b‑containing/EamA‑like transporter family protein |
| ? | NC_000913_3_hsa_tpiA | = 4136030 | 91 (2.030) | intergenic (+33/‑60) | katG/yijE | catalase‑peroxidase HPI, heme b‑containing/EamA‑like transporter family protein | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 4171589 | 24 (0.500) | 6 (0.130) | 5/274 | 5.9 | 20.7% | intergenic (+63/‑30) | rrlB/rrfB | 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon |
| ? | NC_000913_3_hsa_tpiA | = 4213004 | NA (NA) | intergenic (+76/‑18) | rrlE/rrfE | 23S ribosomal RNA of rrnE operon/5S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | 4094467 = | 147 (3.070) | 5 (0.110) | 5/276 | 5.9 | 3.5% | noncoding (152/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | NC_000913_3_hsa_tpiA | 4094647 = | 130 (2.820) | noncoding (332/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | |||||
| * | ? | NC_000913_3_hsa_tpiA | 4094458 = | 149 (3.110) | 5 (0.110) | 5/276 | 5.9 | 3.4% | noncoding (143/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | NC_000913_3_hsa_tpiA | 4094472 = | 138 (2.990) | noncoding (157/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 3946688 | 51 (1.070) | 6 (0.130) | 5/274 | 5.9 | 10.9% | intergenic (+81/‑12) | rrlC/rrfC | 23S ribosomal RNA of rrnC operon/5S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_hsa_tpiA | = 4171583 | NA (NA) | intergenic (+57/‑36) | rrlB/rrfB | 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2726200 = | NA (NA) | 6 (0.130) | 5/274 | 5.9 | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon |
| ? | NC_000913_3_hsa_tpiA | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 228744 | 38 (0.790) | 6 (0.130) | 5/274 | 5.9 | 14.1% | intergenic (+82/‑12) | rrlH/rrfH | 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_hsa_tpiA | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 2806992 | 46 (0.960) | 5 (0.110) | 5/284 | 6.1 | 10.4% | coding (983/1065 nt) | proW | glycine betaine/proline ABC transporter permease |
| ? | NC_000913_3_hsa_tpiA | = 2807013 | 40 (0.840) | coding (1004/1065 nt) | proW | glycine betaine/proline ABC transporter permease | |||||
| * | ? | NC_000913_3_hsa_tpiA | 1736086 = | 53 (1.110) | 4 (0.090) | 4/264 | 6.2 | 7.6% | intergenic (+127/+35) | sodB/ydhP | superoxide dismutase, Fe/putative MFS transporter, inner membrane protein |
| ? | NC_000913_3_hsa_tpiA | 1736112 = | 49 (1.110) | intergenic (+153/+9) | sodB/ydhP | superoxide dismutase, Fe/putative MFS transporter, inner membrane protein | |||||