New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	4555343 =	41 (0.840)	3 (0.070)	3/260	7.0	7.9%	intergenic (+12/+129)	uxuR/yjiC	fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor/uncharacterized protein
	?	NC_000913_3_hsa_tpiA	4555372 =	32 (0.710)					intergenic (+41/+100)	uxuR/yjiC	fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor/uncharacterized protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCGAGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTA‑CTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCAA  >  NC_000913_3_hsa_tpiA/4555196‑4555482                                                                                                                                                    |                                                                                                                                             ccGGGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGGATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTAtaataa                                                                                                                                             <  1:77697/149‑1 (MQ=255)        gcgAAGCTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTTCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATGCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAg                                                                                                                                      <  1:163499/149‑1 (MQ=255)        gcgAAGCTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAg                                                                                                                                      >  1:225125/1‑149 (MQ=255)         cgAAGCTGGCAATGTGGCATCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTAATCTGATGGCTATCTGCTAGATTCATGGCCGCTGGATAAAGTCGAGGCATAACTTCTTATAATAAGCGCCAgg                                                                                                                                     >  2:730073/1‑149 (MQ=255)         cgAAGCTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAgg                                                                                                                                     <  2:500146/149‑1 (MQ=255)              cTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTaaa                                                                                                                                <  1:612143/149‑1 (MQ=255)               tGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAAc                                                                                                                               >  1:193160/1‑149 (MQ=255)                 gCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGt                                                                                                                             >  1:823099/1‑149 (MQ=255)                               tCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCt                                                                                                               <  2:422746/149‑1 (MQ=255)                                   gAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTaaa                                                                                                           <  2:573001/149‑1 (MQ=255)                                    aaaaCGTTAAGCCATGTCGGCTGGAATTCTCGAACGTCGACCATTTTTATTCTGATTGCTAGCTTTTTGAATCATGGCCGTTGCATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAATGTTCCTTGCGCTTTCTTAAAt                                                                                                          <  2:437655/149‑1 (MQ=255)                                       aCGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTaa                                                                                                       <  1:339505/149‑1 (MQ=255)                                       aCGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTaa                                                                                                       <  1:39235/149‑1 (MQ=255)                                              gttaCGTCGGTTGGAATTCTTGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCg                                                                                                <  2:441387/146‑1 (MQ=255)                                                          ggAATTCTCGAACGTTGACTATAGTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTa                                                                                    <  2:416749/149‑1 (MQ=255)                                                            aaTTCTCGAACGGTCACGATATTTATTTTGATGGGTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTA‑Ct                                                                                 <  2:849575/149‑1 (MQ=255)                                                                cgctatcGTTGGCTATAGTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCCTAAATTAAGAAGTCGCAATGAGTATTA‑CTTTGt                                                                             <  1:605646/143‑1 (MQ=255)                                                                 tcGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCaa                                                                                                                                       >  1:64455/1‑91 (MQ=255)                                                                 tcGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCaa                                                                                                                                       <  2:64455/91‑1 (MQ=255)                                                                       gTTGTCGATATTTATTTTGATGGCTATGTGTTTGATTTATGGCCGCTGGATAAAGTCCACGCCTGACTTATTATACGAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTA‑CTTTGTAAATTGc                                                                      <  1:235485/149‑1 (MQ=255)                                                                                    attgTGATGGCTAACTGTTTTATTTATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACATTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTA‑CTTTGTAAATTGCAGGGTATTGTTTa                                                         <  2:670473/149‑1 (MQ=255)                                                                                       tttaTGGCTATCTGTCTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTACTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTC‑CTTTGTAAATTGCAGGGTATTGTTCAGCt                                                      <  2:659294/146‑1 (MQ=255)                                                                                         gATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTA‑CTTTGTAAATTGCAGGGTATTGTTTAGCTAt                                                    <  2:193160/149‑1 (MQ=255)                                                                                           tGGCTTTTTGTTTGATTCATGGCGGTTGGAGAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGAATCATCGTTG‑ATGTTGCAGGGTATTGTTTAGCTATCt                                                  <  2:188220/149‑1 (MQ=255)                                                                                           tGGCTATCTGTTTGATTCATGGCCGCTGGGTAAAGTCGACGCCTTACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTA‑CTTTGTAAATTGCAGGGTATTGTTTAGCTATCt                                                  <  2:453892/149‑1 (MQ=255)                                                                                           tGGCTATCTGTTGGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTA‑CTTTGTAAATTGCAGGGTATTGTTTAGCTATCt                                                  <  1:749641/149‑1 (MQ=255)                                                                                               tATCTGTTTGAGTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTGCTTAAATTAAGAAGTCGCAATGAGTATTA‑CTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGtat                                              <  1:100039/149‑1 (MQ=255)                                                                                                     tttGATTCATGGCCGCTGGATAAGGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTA‑Ct                                                                                 >  1:627266/1‑108 (MQ=255)                                                                                                     tttGATTCATGGCCGCTGGATAAGGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTA‑Ct                                                                                 <  2:627266/108‑1 (MQ=255)                                                                                                     tttGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAAc                                                                                                                               >  2:247558/1‑63 (MQ=255)                                                                                                     tttGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAAc                                                                                                                               <  1:247558/63‑1 (MQ=255)                                                                                                        gATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTA‑CTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAAt                                     >  1:485883/1‑149 (MQ=255)                                                                                                        gATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTA‑CTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAAt                                     <  1:278817/149‑1 (MQ=255)                                                                                                             atcgCCGTTCGATAAAGTCGACGCCTGACTTATTATAATAACCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTA‑CTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAg                                <  1:276642/146‑1 (MQ=255)                                                                                                                       gATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTA‑CTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCAttct                      >  1:13350/1‑149 (MQ=255)                                                                                                                             gTCGACGCCTGACTTATTATAATGAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTA‑CTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTgg                <  1:728256/149‑1 (MQ=255)                                                                                                                                gACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCATTTTTTTATTAATAAGTCGAAATGAGTATTA‑CTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAg             >  1:602683/1‑149 (MQ=255)                                                                                                                                          ttattaTAATAAGCCCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTA‑CTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCa   <  2:352093/149‑1 (MQ=255)                                                                                                                                           tattatAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTA‑CTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTGGTTCTTTACCaa  >  1:73957/1‑149 (MQ=255)                                                                                                                                              tataATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTA‑CTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTa                              <  2:175422/118‑1 (MQ=255)                                                                                                                                              tataATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTA‑CTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTa                              >  1:175422/1‑118 (MQ=255)                                                                                                                                                    |                                                                                                                                             CCGAGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTA‑CTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCAA  >  NC_000913_3_hsa_tpiA/4555196‑4555482

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.