New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA 4555343 =41 (0.840)3 (0.070) 3/260 7.0 7.9% intergenic (+12/+129) uxuR/yjiC fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor/uncharacterized protein
?NC_000913_3_hsa_tpiA 4555372 = 32 (0.710)intergenic (+41/+100) uxuR/yjiC fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor/uncharacterized protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCAATATAATTCCATTCACCATTTTTTAATTCAAA  >  NC_000913_3_hsa_tpiA/4555226‑4555513
                                                                                                                                                  |                                                                                                                                              
tCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCt                                                                                                                                              <  2:422746/149‑1 (MQ=255)
    gAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTaaa                                                                                                                                          <  2:573001/149‑1 (MQ=255)
     aaaaCGTTAAGCCATGTCGGCTGGAATTCTCGAACGTCGACCATTTTTATTCTGATTGCTAGCTTTTTGAATCATGGCCGTTGCATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAATGTTCCTTGCGCTTTCTTAAAt                                                                                                                                         <  2:437655/149‑1 (MQ=255)
        aCGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTaa                                                                                                                                      <  1:339505/149‑1 (MQ=255)
        aCGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTaa                                                                                                                                      <  1:39235/149‑1 (MQ=255)
               gttaCGTCGGTTGGAATTCTTGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCg                                                                                                                               <  2:441387/146‑1 (MQ=255)
                           ggAATTCTCGAACGTTGACTATAGTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTa                                                                                                                   <  2:416749/149‑1 (MQ=255)
                             aaTTCTCGAACGGTCACGATATTTATTTTGATGGGTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACt                                                                                                                <  2:849575/149‑1 (MQ=255)
                                 cgctatcGTTGGCTATAGTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCCTAAATTAAGAAGTCGCAATGAGTATTACTTTGt                                                                                                            <  1:605646/143‑1 (MQ=255)
                                        gTTGTCGATATTTATTTTGATGGCTATGTGTTTGATTTATGGCCGCTGGATAAAGTCCACGCCTGACTTATTATACGAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGc                                                                                                     <  1:235485/149‑1 (MQ=255)
                                                     attgTGATGGCTAACTGTTTTATTTATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACATTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTa                                                                                        <  2:670473/149‑1 (MQ=255)
                                                        tttaTGGCTATCTGTCTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTACTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTCCTTTGTAAATTGCAGGGTATTGTTCAGCt                                                                                     <  2:659294/146‑1 (MQ=255)
                                                          gATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTAt                                                                                   <  2:193160/149‑1 (MQ=255)
                                                            tGGCTTTTTGTTTGATTCATGGCGGTTGGAGAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGAATCATCGTTGATGTTGCAGGGTATTGTTTAGCTATCt                                                                                 <  2:188220/149‑1 (MQ=255)
                                                            tGGCTATCTGTTTGATTCATGGCCGCTGGGTAAAGTCGACGCCTTACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCt                                                                                 <  2:453892/149‑1 (MQ=255)
                                                            tGGCTATCTGTTGGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCt                                                                                 <  1:749641/149‑1 (MQ=255)
                                                                tATCTGTTTGAGTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTGCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGtat                                                                             <  1:100039/149‑1 (MQ=255)
                                                                      tttGATTCATGGCCGCTGGATAAGGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACt                                                                                                                >  1:627266/1‑108 (MQ=255)
                                                                      tttGATTCATGGCCGCTGGATAAGGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACt                                                                                                                <  2:627266/108‑1 (MQ=255)
                                                                         gATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAAt                                                                    >  1:485883/1‑149 (MQ=255)
                                                                         gATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAAt                                                                    <  1:278817/149‑1 (MQ=255)
                                                                              atcgCCGTTCGATAAAGTCGACGCCTGACTTATTATAATAACCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAg                                                               <  1:276642/146‑1 (MQ=255)
                                                                                        gATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCAttct                                                     >  1:13350/1‑149 (MQ=255)
                                                                                              gTCGACGCCTGACTTATTATAATGAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTgg                                               <  1:728256/149‑1 (MQ=255)
                                                                                                 gACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCATTTTTTTATTAATAAGTCGAAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAg                                            >  1:602683/1‑149 (MQ=255)
                                                                                                           ttattaTAATAAGCCCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCa                                  <  2:352093/149‑1 (MQ=255)
                                                                                                            tattatAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTGGTTCTTTACCaa                                 >  1:73957/1‑149 (MQ=255)
                                                                                                               tataATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTa                                                             <  2:175422/118‑1 (MQ=255)
                                                                                                               tataATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTa                                                             >  1:175422/1‑118 (MQ=255)
                                                                                                                          cAAGGGTAAACGTTGCTTGCGCTTTCTTAGATTAAGTGGTCGCTATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCAATATAATTCCATTCa                   <  1:806843/149‑1 (MQ=255)
                                                                                                                                  aaCGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCAATATAATTCCATTCACCAttttt           >  1:758010/1‑149 (MQ=255)
                                                                                                                                   aCGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTAACAATATAATTCGATTAACCAtttttt          >  1:170940/1‑149 (MQ=255)
                                                                                                                                          ttGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCt                                                 >  1:72878/1‑103 (MQ=255)
                                                                                                                                          ttGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCt                                                 <  2:72878/103‑1 (MQ=255)
                                                                                                                                           tGCGATTCCTTCAATTAAGCAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCAATATAATTCCATTCACCATTTTTTAATTCaaa  <  2:823099/149‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                              
TCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCAATATAATTCCATTCACCATTTTTTAATTCAAA  >  NC_000913_3_hsa_tpiA/4555226‑4555513

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.