mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_hsa_tpiA | 710,173 | 0 | A | G | 23.1% | 59.5 / 15.6 | 39 | intergenic (+57/+27) | chiQ/fur | chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor |
| Marginal new junction evidence (lowest skew 10 of 23 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | = 1428264 | NA (NA) | 13 (0.390) | 7/268 | 3.2 | 100% | coding (463/981 nt) | insH1 | IS5 transposase and trans‑activator |
| ? | NC_000913_3_hsa_tpiA | = 2066866 | 0 (0.000) | coding (456/1017 nt) | insH1 | IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913_3_hsa_tpiA | 1396531 = | NA (NA) | 13 (0.390) | 7/268 | 3.2 | NA | coding (456/1017 nt) | insH1 | IS5 transposase and trans‑activator |
| ? | NC_000913_3_hsa_tpiA | = 1428264 | NA (NA) | coding (463/981 nt) | insH1 | IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 2066832 | 8 (0.230) | 6 (0.180) | 6/262 | 3.4 | 44.5% | coding (490/1017 nt) | insH1 | IS5 transposase and trans‑activator |
| ? | NC_000913_3_hsa_tpiA | = 2102447 | NA (NA) | coding (465/1017 nt) | insH1 | IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 2066832 | 8 (0.230) | 6 (0.180) | 6/262 | 3.4 | 61.6% | coding (490/1017 nt) | insH1 | IS5 transposase and trans‑activator |
| ? | NC_000913_3_hsa_tpiA | = 2066857 | 0 (0.000) | coding (465/1017 nt) | insH1 | IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 4040683 | 53 (1.500) | 13 (0.370) | 5/276 | 4.0 | 22.2% | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913_3_hsa_tpiA | = 4213144 | 39 (1.120) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2798052 = | NA (NA) | 5 (0.140) | 5/276 | 4.0 | NA | intergenic (+8/+39) | ygaP/stpA | DUF2892 family inner membrane rhodanese/DNA binding protein, nucleoid‑associated |
| ? | NC_000913_3_hsa_tpiA | 2798084 = | NA (NA) | intergenic (+40/+7) | ygaP/stpA | DUF2892 family inner membrane rhodanese/DNA binding protein, nucleoid‑associated | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 715221 | 48 (1.360) | 4 (0.120) | 4/258 | 4.2 | 8.5% | intergenic (+23/‑191) | pgm/ybfP | phosphoglucomutase/lipoprotein |
| ? | NC_000913_3_hsa_tpiA | = 715231 | 42 (1.290) | intergenic (+33/‑181) | pgm/ybfP | phosphoglucomutase/lipoprotein | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 3255287 | NA (NA) | 4 (0.120) | 4/268 | 4.3 | NA | noncoding (71/103 nt) | REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913_3_hsa_tpiA | = 3255319 | NA (NA) | noncoding (103/103 nt) | REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 761670 | 43 (1.220) | 4 (0.120) | 4/270 | 4.3 | 8.7% | coding (149/1218 nt) | sucB | dihydrolipoyltranssuccinase |
| ? | NC_000913_3_hsa_tpiA | = 761713 | 43 (1.260) | coding (192/1218 nt) | sucB | dihydrolipoyltranssuccinase | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 752206 | 31 (0.880) | 4 (0.120) | 4/268 | 4.3 | 12.4% | intergenic (‑37/+23) | ybgQ/ybgD | putative outer membrane protein/putative fimbrial‑like adhesin protein |
| ? | NC_000913_3_hsa_tpiA | = 752212 | 27 (0.800) | intergenic (‑43/+17) | ybgQ/ybgD | putative outer membrane protein/putative fimbrial‑like adhesin protein | |||||