New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA 4271668 =32 (1.340)4 (0.180) 4/272 2.7 13.5% coding (2186/2823 nt) uvrA ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC
?NC_000913_3_hsa_tpiA 4271755 = 21 (0.930)coding (2099/2823 nt) uvrA ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC
Rejected: Frequency below/above cutoff threshold.

TCTCCAGCGTTTCACGGTTATAGCGTTTACCTTTGCACTGGTCGCACGGCACGTAGATATCCGGCAGGAAGTGCATCTCCACTTTGATCACGCCATCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAA  >  NC_000913_3_hsa_tpiA/4271522‑4271811
                                                                                                                                                  |                                                                                                                                               
gacacactgttcccgattgcccaacgccagttgaatggggcgaccatcgccgaaccagcaccgtatcgcgatattcaggggctggagcatttcgataaagtgatcgatatcgaccaaagcccaattggtcgtactccacgttctaaccc                                                                                                                                               >  1:365719‑M1/147‑149 (MQ=255)
   acactgttcccgattgcccaacgccagttgaatggggcgaccatcgccgaaccagcaccgtatcgcgatattcaggggctggagcatttcgataaagtgatcgatatcgaccaaagcccaattggtcgtactccccgttctacCCCGGc                                                                                                                                            <  1:409694‑M1/6‑1 (MQ=255)
       cGTTTCACGGTTATAGCGTTTACCTTTGCACTGGTCGCACGGCAAGTAGATATCCGGCAGGAAGTGCATCTCCACTTTGATCACGCCATCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGtat                                                                                                                                        <  1:289928/149‑1 (MQ=255)
             aCGGTTATAGCGTTTACCTTTGCACTGGTCGCACGGCACGTAGATATCCGGCAGGAAGTGCATCTCCACTTTGATCACGCCATCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCcgc                                                                                                                                  >  2:181002/1‑149 (MQ=255)
                    ccaacgccagttgaatggggcgaccatcgccgaaccagcaccgtatcgcgatattcaggggctggagcatttcgataaagtgatcgatatcgaccaaagcccaattggtcgtactccacgttctaaCCCGGCGTATAGCCGCGCGCACg                                                                                                                           <  1:257819‑M1/23‑1 (MQ=255)
                         tttACCTTTGCACTGGTCGCACGGCACGTAGATATCCGGCAGGAAGTGCATCTCCACTTTGATCACGCCATCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGAtt                                                                                                                      >  1:85535/1‑149 (MQ=255)
                             ccTTTGCACTGGTCGCACGGCACGTAGATATCCGGCAGGAAGTGCATCTCCACTTTCATCACGCCATCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCgg                                                                                                                  <  1:35283/149‑1 (MQ=255)
                               tttGCACTGGTCGCACGGCACGTAGATATCCGGCAGGAAGTGCATCTCCACTTTGATCACGCCATCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTa                                                                                                                <  2:389589/149‑1 (MQ=255)
                                    aCTGGTCGCACGGCACGTAGATATCCGGCAGGAAGTGCATCTCCACTTTGATCACGCCATCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGACCGGGATTCCGGTACGccc                                                                                                           >  2:348263/1‑149 (MQ=255)
                                             acggcacgTAGATTTCCGGCAGGAAGTGCATCTCCACTTTGATCACGCCATCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGt                                                                                                  >  2:376687/1‑149 (MQ=255)
                                                         tatCCGGCAGGAAGTGCATCTCCACTTTGATCACGCCATCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGc                                                                                      <  1:181002/149‑1 (MQ=255)
                                                           tCCGGCAGGAAGTGCATCTCCACTTTGATCACGCCATCGCCCTGACAGGCCTCGCAGCGTCCGCCACTAACGTTAAAGCTGAAAAGTCCCGGCGTATATCCGCGCGCACTGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGt                                                                                    <  2:363542/149‑1 (MQ=255)
                                                             cGGCAGGAAGTGCATCTCCACTTTGATCACGCCATCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTaa                                                                                  <  1:356900/149‑1 (MQ=255)
                                                               gCAGGAAGTGCATCTCCACTTTGATCACGCCATCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAac                                                                                >  2:346402/1‑149 (MQ=255)
                                                                   gcagcgtaTCTCCACTTTGATCACGCCATCGCCCTGACATGCCTCGCAGCTTCCGCTGCTAACGTTAAAGCTTAACTATCCCGATGTATATCCGCGCGCACGGGATTCCGGTACGCCCGCTAACAGTTCGCGCACAGGCGTAAACACGc                                                                            <  2:317645/142‑1 (MQ=255)
                                                                          aTCTCCACTTTGATCACGCCATCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGATCTCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGtata                                                                     >  1:393259/1‑149 (MQ=255)
                                                                           tctcCACTTTGATCACGCCATCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAg                                                                    >  2:332282/1‑149 (MQ=255)
                                                                           tctcCACTTTGATCACGCCATCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCATTCCTTTTGCGCTCACAGGCGTAAACACGCCGGTATAg                                                                    <  1:207764/149‑1 (MQ=255)
                                                                             tcCACTTTGATCACGCCATCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCAGGTATAGGt                                                                  >  1:113984/1‑149 (MQ=255)
                                                                             ggggctggagcatttcgataaagtgatcgatatcgaccaaagcccaattggtcgtactccacgttctaaCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGt                                                                  <  1:346913‑M1/80‑1 (MQ=255)
                                                                                 cTTTGATCACGCCATCGCCCCGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCCCACAGGCGTAAACACGCCGGTATAGGTCGcc                                                              >  2:260232/1‑149 (MQ=255)
                                                                                  cttGATCACGCCATCGCCCTTACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCg                                                             <  1:260997/148‑1 (MQ=255)
                                                                                     gATCACGCCATCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGt                                                          <  1:332282/149‑1 (MQ=255)
                                                                                     agcatttcgataaagtgatcgatatcgaccaaagcccaattggtcgtactccacgttctaaCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGt                                                          >  2:257819‑M1/62‑149 (MQ=255)
                                                                                             cATCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCATAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGt                                                  >  1:32695/1‑149 (MQ=255)
                                                                                              agcGCTCTGACGGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTg                                                 <  2:11901/147‑1 (MQ=255)
                                                                                               tCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAAGGTgg                                                >  1:336003/1‑149 (MQ=255)
                                                                                               tCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTgg                                                <  1:346402/149‑1 (MQ=255)
                                                                                                cGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGa                                               <  2:384378/149‑1 (MQ=255)
                                                                                                aaagtgatcgatatcgaccaaagcccaattggtcgtactccacgttctaaCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGa                                               >  2:346913‑M1/51‑149 (MQ=255)
                                                                                                 gCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGAg                                              <  1:35094/149‑1 (MQ=255)
                                                                                                  cccTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGAGt                                             >  2:310288/1‑149 (MQ=255)
                                                                                                  cccTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGAGt                                             >  2:336608/1‑149 (MQ=255)
                                                                                                           gCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGAGTACGACCAAt                                    <  1:136354/149‑1 (MQ=255)
                                                                                                                                     aaaGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGCTCCCtc          >  1:90165/1‑148 (MQ=255)
                                                                                                                                        gCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTAt       <  1:159644/149‑1 (MQ=255)
                                                                                                                                         cTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATc      <  2:304680/149‑1 (MQ=255)
                                                                                                                                             aaCGTCCCGGCGTATAGCCGCGCGCACGGCATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGaaa  <  1:174632/149‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                               
TCTCCAGCGTTTCACGGTTATAGCGTTTACCTTTGCACTGGTCGCACGGCACGTAGATATCCGGCAGGAAGTGCATCTCCACTTTGATCACGCCATCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAA  >  NC_000913_3_hsa_tpiA/4271522‑4271811

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.