| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | 4271668 = | 32 (1.340) | 4 (0.180) | 4/272 | 2.7 | 13.5% | coding (2186/2823 nt) | uvrA | ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC |
| ? | NC_000913_3_hsa_tpiA | 4271755 = | 21 (0.930) | coding (2099/2823 nt) | uvrA | ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GATCACGCCATCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGGGCAATCGGGAACAGTGTGTC > NC_000913_3_hsa_tpiA/4271607‑4271900 | gATCACGCCATCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGt < 1:332282/149‑1 (MQ=255)agcatttcgataaagtgatcgatatcgaccaaagcccaattggtcgtactccacgttctaaCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGt > 2:257819‑M1/62‑149 (MQ=255) cATCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCATAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGt > 1:32695/1‑149 (MQ=255) agcGCTCTGACGGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTg < 2:11901/147‑1 (MQ=255) tCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAAGGTgg > 1:336003/1‑149 (MQ=255) tCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTgg < 1:346402/149‑1 (MQ=255) cGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGa < 2:384378/149‑1 (MQ=255) aaagtgatcgatatcgaccaaagcccaattggtcgtactccacgttctaaCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGa > 2:346913‑M1/51‑149 (MQ=255) gCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGAg < 1:35094/149‑1 (MQ=255) cccTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGAGt > 2:336608/1‑149 (MQ=255) cccTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGAGt > 2:310288/1‑149 (MQ=255) gCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGAGTACGACCAAt < 1:136354/149‑1 (MQ=255) aaaGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGCTCCCtc > 1:90165/1‑148 (MQ=255) tccacgttctaacccggcgacctataccggcgtgtttacgcctgtgcgcgaactgtttgcgggcgtaccggaatcccgtgcgcgcggctatacgccgggTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACttt > 2:346913‑M2/100‑149 (MQ=255) gCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTAt < 1:159644/149‑1 (MQ=255) cTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATc < 2:304680/149‑1 (MQ=255) aaCGTCCCGGCGTATAGCCGCGCGCACGGCATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGaaa < 1:174632/149‑1 (MQ=255) acccggcgacctataccggcgtgtttacgcctgtgcgcgaactgtttgcgggcgtaccggaatcccgtgcgcgcggctatacgccgggTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCt > 2:257819‑M2/89‑149 (MQ=255) CCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGa < 2:125235‑M1/98‑1 (MQ=255) CCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGa > 1:125235‑M1/1‑98 (MQ=255) CCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTcc > 1:310288‑M1/1‑149 (MQ=255) CGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCa > 1:376687‑M1/1‑149 (MQ=255) acctataccggcgtgtttacgcctgtgcgcgaactgtttgcgggcgtaccggaatcccgtgcgcgcggctatacgccgggTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGcccc < 1:346913‑M2/69‑1 (MQ=255) aGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGAGTACGACCAATTGGGGTTGGGTCGATATCGATCACTTTATCGAACTGCTCCAGCCACTgc > 1:10903/1‑148 (MQ=255) ttCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGAGTACGACCAATTGGGCTTTGGGCGAGATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTg > 1:349528/1‑149 (MQ=255) ccGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGGATATCGCGATACGGTGCTGGTTCGGCg > 1:48145/1‑149 (MQ=255) cGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGATAGAAGGTTGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGa > 1:331243/1‑149 (MQ=255) aGTTCGCGCACAGGCGGAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGc < 2:408672/149‑1 (MQ=255) gTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCg > 2:308302/1‑149 (MQ=255) cgtgcgcgcggctatacgccgggTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTgg < 1:257819‑M2/126‑1 (MQ=255) gTATAGGTCGCCGGGTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGGGCAATCgg < 1:336608/149‑1 (MQ=255) gccgggGTAGAACGGGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGGGCAATCGGGAACAgtgt < 1:409694‑M2/143‑1 (MQ=255) gggTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGGGCAATCGGGAACAGTGTGTc > 1:365719‑M2/4‑149 (MQ=255) ttAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATcgc < 2:329107/79‑1 (MQ=255) ttAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGATCCAGCCCCTGAATATcgc > 1:329107/1‑79 (MQ=255) | GATCACGCCATCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGGGCAATCGGGAACAGTGTGTC > NC_000913_3_hsa_tpiA/4271607‑4271900 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |