New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 3570877	30 (1.260)	4 (0.180)	4/274	2.7	11.6%	coding (443/1974 nt)	glgX	glycogen debranching enzyme
	?	NC_000913_3_hsa_tpiA	= 3570891	32 (1.400)					coding (429/1974 nt)	glgX	glycogen debranching enzyme
Rejected: Frequency below/above cutoff threshold.

CCCAATTGTTTCAAATAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCATTATGACCGGCGTGCAGCAGCGGGTTATCTTTAAACTCCCCGTCAATTT  >  NC_000913_3_hsa_tpiA/3570745‑3571024                                                                                                                                     |                                                                                                                                                    cccAAGTGTTTCAAATAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGATCTCGACCGGGACCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCgg                                                                                                                                     >  2:1222‑M2/1‑147 (MQ=255)  ccAATTGTTTCAAATAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCggg                                                                                                                                    >  1:390067‑M2/1‑146 (MQ=255)  caaattGTGTCAAAGAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCgccgcgcacgccgtggg                                                                                                                                    <  2:201987‑M1/147‑18 (MQ=255)   cAATTGTTTCAAATAGTTGATCATCACTGGATGCCCGAGGGCTTTATAAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCgggg                                                                                                                                   >  2:251034‑M2/1‑145 (MQ=255)       tGTTTCAAATAGTTGCTCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGcatc                                                                                                                               <  1:174634/149‑1 (MQ=255)           tCAAATAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCgccgcgcacgccgtgggcgggcacca                                                                                                                           >  2:419785‑M1/1‑123 (MQ=255)              aaTGGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTcc                                                                                                                        <  1:172993/149‑1 (MQ=255)              aaTAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTcc                                                                                                                        <  1:42141/149‑1 (MQ=255)                tAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCgccgcgcacgccgtggggcagcaccatcatt                                                                                                                      <  1:280010‑M1/149‑32 (MQ=255)                 aGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAg                                                                                                                     <  1:233117/149‑1 (MQ=255)                   ttGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGcatc                                                                                                                               >  1:221220/1‑137 (MQ=255)                   ttGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGcatc                                                                                                                               <  2:221220/137‑1 (MQ=255)                      accatcaccGGATGCCCGAGGGCTTTATAAGTGCCACGGATCTCGACCGTGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCgccgcgcacgccgtggggcagcaccatcatttatgaa                                                                                                                <  1:419785‑M1/147‑38 (MQ=255)                          tcaCCGGATGCCCGAGGGCTTTATAAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAAGCATTTTACCTGGGCTTCATAAATGATGGTGCTGCCCCACGCAGTGCGCGGCGCAGCATCCTCTTCCCCGTCaccgtta                                                                                                            >  2:106604/1‑143 (MQ=255)                                          ggCTTTATAAGTGCCACGGATCTCGCCCGTGATCTCCGGGTGGAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCATCACTACGc                                                                                            <  1:407145/149‑1 (MQ=255)                                             tttATAAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCGCTACGCAtt                                                                                         >  2:358759/1‑149 (MQ=255)                                                        cACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATg                                                                              >  1:88024/1‑149 (MQ=255)                                                         aCGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCCACCACCACTACGCATTTCGGCGCAATgg                                                                             >  1:220385/1‑149 (MQ=255)                                                             aTCTCGCCCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATggcggc                                                                         <  1:213936/149‑1 (MQ=255)                                                             aTCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATggcggc                                                                         <  2:343859/149‑1 (MQ=255)                                                                        gATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGAt                                                              >  1:12484/1‑149 (MQ=255)                                                                              ccggTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAg                                                        <  1:25204/147‑1 (MQ=255)                                                                                     aaGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCAt                                                  >  1:192389/1‑148 (MQ=255)                                                                                     aaGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCAt                                                  <  2:192389/148‑1 (MQ=255)                                                                                     aaGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCACGGAGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTGGCGTTGGTCAGGTTCAtg                                                 >  1:209581/1‑148 (MQ=255)                                                                                           gTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGTCGTGCGCGGCGGGGCATCAGTTTCCCAGTCATAGTGAGCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGACGCGATAGTCAGGTTCATAATGAcc                                           >  1:380142/1‑149 (MQ=255)                                                                                              atgtgtttGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTACCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCATTATGACCGGc                                        <  2:210664/144‑1 (MQ=255)                                                                                                  cTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCATTATGACCGGCGTgc                                    >  2:262474/1‑149 (MQ=255)                                                                                                  cTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCATTATGACCGGCGTgc                                    <  2:12484/149‑1 (MQ=255)                                                                                                      gccATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCACTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCATTATGACCGGCGTgcagca                                <  1:19657/147‑1 (MQ=255)                                                                                                          tGGGGTTCATGAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCATTATGACCGGCGTGCAGCAGCgg                            <  2:49624/149‑1 (MQ=255)                                                                                                           gggCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCATTATGACCGGCGTGCAGCAGCggg                           >  2:132559/1‑149 (MQ=255)                                                                                                              ctgcATAAATGATGGTGCCGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCATTATGACCGGCGTGCAGCAGCGGGTTa                        <  1:175105/146‑1 (MQ=255)                                                                                                               ttCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCggggcagcaccatcatttatgaagcccatgtcaaaggattaacgtacttgcacccggagatcacggtcgagatccgtggcacttataaagccctcgggcatccggtgatggt                       <  1:419785‑M2/149‑113 (MQ=255)                                                                                                                    aaaTGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGATGTCGCGATAGTCAGGTTCATTATGACCGGCGTGCAGCAGCGGGTTATCTTTa                  <  1:276955/149‑1 (MQ=255)                                                                                                                     aaTGATGGTGCTGCCCCACGGCGTGCGCGGCggggcagcaccatcatttatgaagcccatgtcaaaggattaacgtacttgcacccggagatcccggtcgagatccgtggcacttataaagccctcgggcatccggtgatgatcaacta                 <  1:280010‑M2/149‑119 (MQ=255)                                                                                                                      ttgatgTTCCTGCTCCAGGGCGTGCGCGGCGTGGCATCATCTGCCTAGTTATAGTGATCAATCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCTATAGTCAGGTTCATTATGACCGGCGTGCAGCAGCGGGTTATCTTTaaa                <  2:307506/148‑1 (MQ=255)                                                                                                                      atgatgGTGCTGCCCCACGGCCTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCATTATGACCGGCGTGCAGCAGCGGGTTATCTTTaaa                <  1:313826/149‑1 (MQ=255)                                                                                                                          tgGTGCCCGCCCACGGCGTGCGCGGCggggcagcaccatcatttatgaagcccatgtcaaaggattaacgtacttgcacccggagatcccggtcgagatccgtggcacttataaagccctcgggcatccggtgatgatcaactatttga            >  2:419785‑M2/1‑26 (MQ=255)                                                                                                                                tgcCCCACGGCGTGCGCGTCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCATTATGACCGGCGTGCAGCAGCGGGTTATCTTTAAACTCCCCGTCa      >  2:199832/1‑149 (MQ=255)                                                                                                                                  ccccgccgcgcacgccgtggggcagcaccatcatttatgaagcccatgtcaaaggattaacgtacttgcacccggagatcccggtcgagatccgtggcacttataaagccctcgggcatccagtgatgatcaactatttgaaacaattg    >  2:251034‑M1/1‑4 (MQ=255)                                                                                                                                   cccgccgcgcacgccgtggggcagcaccatcatttatgaagcccatgtcaaaggattaacgtacttgcacccggagatcccggtcgagatccgtggcacttataaagccctcgggcatccggtgatgatcaactatttgaaacaattgg   >  1:390067‑M1/1‑3 (MQ=255)                                                                                                                                   cccACGGCGTGCGCGGCggggcagcaccatcatttatgaagcccatgtcaaaggattaacgtacttgcacccggagatcccggtcgagatccgtggcacttataaagccctcgggcatccggtgatgatcaactctttgacacaatttg   <  2:201987‑M2/149‑133 (MQ=255)                                                                                                                                    ccgccgcgcacgccgtggggcagcaccatcatttatgaagcccatgtcaaaggattaacgtacttgcacccggaggtcccggtcgagatccgtggcacttataaagccctcgggcatccggtgatgatcaactatttgaaacacttggg  >  2:1222‑M1/1‑2 (MQ=255)                                                                                                                                     |                                                                                                                                                    CCCAATTGTTTCAAATAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCATTATGACCGGCGTGCAGCAGCGGGTTATCTTTAAACTCCCCGTCAATTT  >  NC_000913_3_hsa_tpiA/3570745‑3571024

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.