New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	3190438 =	21 (0.880)	4 (0.180)	4/274	2.7	17.3%	coding (558/750 nt)	yqiH	putative periplasmic pilin chaperone
	?	NC_000913_3_hsa_tpiA	3190453 =	18 (0.790)					coding (573/750 nt)	yqiH	putative periplasmic pilin chaperone
Rejected: Frequency below/above cutoff threshold.

ATTAGAAGACGATGGGGTAATGACTTACGAAAAAGTTGAAATCATTCGTAGAAATGACGGTTCGATCCGCTTTAACAATAAGATGCCTTATCACGTTACGCTGGGTTATATCGGAACAAATGGGGTAACGATGTTACCACAAACGCAAAGCTTAATGGTAACCCCTTTTAGCTATGCAAATACGCAGTTTAAAAATGTTCCGTCAACTTTTCAGGTGGGTTATATCAATGACTTTGGTGGATTAAGTTTTTATGAAATAAACTGCCCTGTAGTAAATAACATTTGTA  >  NC_000913_3_hsa_tpiA/3190315‑3190601                                                                                                                                           |                                                                                                                                                     aTTAGAAGACGATGGGGTAATGACTTACGAAAAAGTTGAAATCATTCGTAGAAATGACGGTTCGATCCGCTTTAACAATAAGATGCCTTATCACGTTACGCTGGGTTATATCGGAACAAATGGGGTAACGATGTTACCACAAACGCaaa                                                                                                                                            <  2:116470/149‑1 (MQ=255)  ttAGAAGACGATGGGGTAATGACTTACGAAAAAGTTGAAATCATTCGTAGAAATGACGGTTCGATCCGCTTTAACAATAAGATGCCTTATCACGTTACGCTGGGTTATATCGGAACAAATGGGGTAACGATGTTACCACAAACGCAAAg                                                                                                                                           >  1:391836/1‑149 (MQ=255)           gATGGGGTAATGACTTACGAAAAAGTTGAAATCATTCGTAGAAATGACGGTTCGATCCGCTTTAACACTAAGCTGCCTTATCACGTTACGCTGGGTTGTATCGGAACAACTGTGGTACCGATGTTGCCACGAACGCAGAGCTTGACGGt                                                                                                                                  >  1:185567/1‑149 (MQ=255)           gATGGGGTAATGACTTACGAAAAAGTTGAAATCATTCGTAGAAATGACGGTTCGATCCGCTTTAACAATAAGATGCCTTATCACGTTACGCTGGGTTATACCGGAACAAATGGGGTAACGATGTTACCACAAACGCAAAGCTTAATGGt                                                                                                                                  >  1:184799/1‑149 (MQ=255)                      taCTTACGAAAAAGTTGAAATCATTCGTAGAAATGACGGTTCGATCCGCTTTAACAATAAGATGCCTTATCACGTTACGCTGGGTTATATCGGAACAAATGGGGTAACGATGTTACCACAAACGCAAAGCTTAATGGTAACCCCTTTTa                                                                                                                       <  1:69748/148‑1 (MQ=255)                               aaaaGTTGAAATCATTCGTAGAAATGACGGTTCGATCCGCTTTAACAATAAGATGCCTTATCACGTTACGCTGGGTTATATCGGAACAAATGGGGTAACGATGTTACCACAAACGCAAAGCTTAATGGTAACCCCTTTTAGCTTTGCaa                                                                                                              >  1:146930/1‑149 (MQ=255)                               aaaaGTTGAAATCATTCGTAGAAATGACGGTTCGATCCGCTTTAACAATAAGATGCCTGATAACGTAAAGCTGGGTTATATCGGAACAAATGGGGTAACAATGTAACAACAAACACAAAGCTTAATGTCAACCCCTTTTAGCTATGCaa                                                                                                              >  2:362087/1‑149 (MQ=255)                                 attgatataacccacctgaaaagttgacggaacatttttaaactgcgtatttgcatagctaaaaggggttaccattaagctttgcgtttgtGGTAACGATGTTACCACAAACGCAAAGCTTa                                                                                                                                       >  2:219834‑M1/92‑122 (MQ=255)                                 attgatataacccacctgaaaagttgacggaacatttttaaactgcgtatttgcatagctaaaaggggttaccattaagctttgcgtttgtGGTAACGATGTTACCACAAACGCAAAGCTTa                                                                                                                                       <  1:219834‑M1/31‑1 (MQ=255)                                   gTTGAAATCATTCGTAGAAATGACGGTTCGAACCGCTTTAACAATAAGATGCCTTATCACGTTACGCTGGGGTATATCGGAACAAATGGGGTAACGATGTTACCACAAACGCAAAGCTTAATGGTAACCCCTTTTAGCTATGCAAATAc                                                                                                          <  1:400916/149‑1 (MQ=255)                                                gTAGAAATGACGGTTCGATCCGCTTTAACAATAAGATGCCTTATCACGTTACGCTGGGTTATATCGGACCAACTCGGTTTACGATGGTGCTATAAATTCAAAGCTTAATGGTAACCCCTTTTAACTATCCAAATACGCAGTTTCAAAAt                                                                                             >  2:361656/1‑149 (MQ=255)                                                                 aTCCGCTTTAACAATAAGATGCCTTATCACGTTACGCTGGGTTATATCGGAACAAATGGGGTAACGATGTTACCACAAACGCAAAGCTTAATGGTAACCCCTTTTAGCTATGCAAATAGGCAGTTTAAAAATGTTCCGTCAACTTTGCa                                                                            >  1:419261/1‑149 (MQ=255)                                                                  tCCGCTTTAACAATAAGATGCCTTATCACGTTACGCTGGGTTATATCGGAACAGATGGGGTAACGATGTTACCACAAACGCAAAGCTTAATGGTAACCCCTTTTAGCTATGCAAATACGCAGTTTAAAAATGTTCCGTCAACTTTTCAg                                                                           >  1:277546/1‑149 (MQ=255)                                                                     gCTTTAACAATAAGATGCCTTATCACGTTACGCTGGGTTATATCGGAACAAATGGGGTAACGATGTTACCACAAACGCAAAGCTTAATGGTAACCCCTTTTAGCTATGCAAATACGCAGTTTAAAAATGTTCCTTCCACTTTTCAGGTg                                                                        >  1:35048/1‑149 (MQ=255)                                                                              aTAAGATGCCTTATCACGTTCCGCCGGGTTATATCGGAACAAATGGGGCCACGACGTTACCACAAACGCAAAGCTTAATGGTAACCCCTTTTAGCTATGCAAATACGCAGTTTAAAAATGTTCCGTCAACTTTTCAGGTGGGTTATATc                                                               <  1:267869/149‑1 (MQ=255)                                                                                          ataaCGTTACGCTGGGTTATATCAGAACACATGGGGTAACGATTTTACTACAAACGTAAAGCTTAATGGTAACCCCGTTTATCTATGCAAATACGCAGTTTAAAAATGTTCCGTCAACTTAGCATTTGGGTTATATCAATGACTTtcgt                                                   <  2:260026/146‑1 (MQ=255)                                                                                                     cTGGGTTATATCGGAACAAATTGGGTAACGATGTTACCAAAAACGCAAAGCTTAATGGTACCCCCTTTTAGCTATGCAAATACGCAGTTTAAAAATGTTCCGTCAACTTTTCAGGTGGGTTATATCAATGACTTTGGTGGATTAAGttt                                        <  2:289600/149‑1 (MQ=255)                                                                                                        ggTTATATCGGAACAAATGGGGTAACGATGTTACCACAAACGCAAAGCTTAATGGTAACCCCTTTTAGCTATGCAAATACGCAGTTTAAAAATGTTCCGTCAACTTTTCAGGTGGGTTATATCAATGTCTTTCGTGGATTAAGTTTTTa                                     >  2:234520/1‑149 (MQ=255)                                                                                                            taagctttgcgtttgtggtaacatcgttaccACAAACGCAAAGCTTAATGGTAACCCCTTTTAGCTATGCAAATACGCAGTTTAAAAATGTTCCGTCAACTTTTCAGGTGGGTTATATCAAt                                                            <  1:219834‑M2/91‑1 (MQ=255)                                                                                                            taagctttgcgtttgtggtaacatcgttaccACAAACGCAAAGCTTAATGGTAACCCCTTTTAGCTATGCAAATACGCAGTTTAAAAATGTTCCGTCAACTTTTCAGGTGGGTTATATCAAt                                                            >  2:219834‑M2/32‑122 (MQ=255)                                                                                                                             gtaacatcgttaccCCAAACGCAAAGCTTAATGGTAACCCCTTTTAGCTATGCAAATACGCAGTTTAAAAATGTTCCGTCAACTTTTCAGGTGGGTTATATCAATGACTTTGGTGGATTAAGttttt                                      >  1:395928‑M2/15‑127 (MQ=255)                                                                                                                             gtaacatcgttaccCCAAACGCAAAGCTTAATGGTAACCCCTTTTAGCTATGCAAATACGCAGTTTAAAAATGTTCCGTCAACTTTTCAGGTGGGTTATATCAATGACTTTGGTGGATTAAGttttt                                      <  2:395928‑M2/113‑1 (MQ=255)                                                                                                                             GTAACGATGTTACCACAAACGCAAAGCTTAATGGTAACCCCTTTTAGCTATGCAAATACGCAGTTTAAAAATGTTCCGTCAACTTTTCAGGTGGGTTATATCAATGACTTTGGTGGATTAAGTTTTTATGAAATAAACTGCCCTgtagt                <  1:85115‑M1/149‑1 (MQ=255)                                                                                                                                ACGATGTTACCACAAACGCAAAGCTTAATGGTAACCCCTTTTAGCTATGCACATACGCAGTTTAAAAATGTTCCGTCAACTTTTCAGGTGGGTTATATCAATGACTTTGGTGGATTAAGTTTTTATGAAATAACCTGCCCTGTAATaaa             <  2:83108‑M1/149‑1 (MQ=255)                                                                                                                                  gATGTTACCACAAACGCAAAGATTAATGGTAACCCCTTTTAGCTATGCAAATACGCAGTTTAAAAATGTTCCGTCAACTTTTCAGGTGGGTTATATCAATGACTTTGGTGGATTAAGTTTTTATGAAATAAACTGCCCTGTAGTAAATa           >  1:370613/1‑149 (MQ=255)                                                                                                                                    tGTTACCACAAACGCAAAGCTTAATGGTAACCCCTTTTAGCTATGCAAATACGCAGTTTAAAAATGTTCCGTCGACTTTTCAGGTGGGTTATATCAATGACTTTGGTGGGTTAAGTTGTTATGAAATCAACTGCCCTATAgtaagtaaa         >  1:336911/1‑148 (MQ=255)                                                                                                                                      ttaccACAAACGCAAAGCTTAATGGTAACCCCTTTTAGCTATGCAAATTCGCAGTTTAAAAATGTTCCGTCAACTTTTCAGGTGGGTTATATCAATGACTTTGGTGGATTAAGTTTTTATGAAATAAACTGCCCTGTAGTAAATAACAt       <  1:189066‑M2/144‑1 (MQ=255)                                                                                                                                        accACAAACGCAAAGCTTAATGGTAACCCCTTTTAGCTATGCAAATACGCAGTTTAAAAATGTTCCGTCAACTTTTCAGGTGGGTTATATCAATGACTTTGGTGGATTAAGTTTTTATGAAATAAACTGCCCTGTAGTAAATAACAttt     <  1:329222‑M2/146‑1 (MQ=255)                                                                                                                                           acaAACGCAAAGCTTAATGGTAACCCCTTTTAGCTATGCAAATACGCAGTTTAGAAATGTTCCGTCAACTTTTCAGGTGGGTTATATCAATGACTTTGGTGGATTAAGTTTTTATGAAATAAACTGCCCTGTAGTAAATAACATTTGTa  >  1:275109/1‑149 (MQ=255)                                                                                                                                           |                                                                                                                                                     ATTAGAAGACGATGGGGTAATGACTTACGAAAAAGTTGAAATCATTCGTAGAAATGACGGTTCGATCCGCTTTAACAATAAGATGCCTTATCACGTTACGCTGGGTTATATCGGAACAAATGGGGTAACGATGTTACCACAAACGCAAAGCTTAATGGTAACCCCTTTTAGCTATGCAAATACGCAGTTTAAAAATGTTCCGTCAACTTTTCAGGTGGGTTATATCAATGACTTTGGTGGATTAAGTTTTTATGAAATAAACTGCCCTGTAGTAAATAACATTTGTA  >  NC_000913_3_hsa_tpiA/3190315‑3190601

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.