New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	1929001 =	43 (1.110)	3 (0.080)	3/266	5.6	6.8%	intergenic (‑162/+47)	ptrB/yebE	protease II/DUF533 family inner membrane protein
	?	NC_000913_3_hsa_tpiA	1929040 =	43 (1.200)					intergenic (‑201/+8)	ptrB/yebE	protease II/DUF533 family inner membrane protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCAATGCCGTCACGAACATCCTGGGGGATTTTCAGCGCGTCACCCAGTGCATTCAGGT  >  NC_000913_3_hsa_tpiA/1928859‑1929145                                                                                                                                               |                                                                                                                                                 gAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGGCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCCGCCTGTTCAAGTGGCTGTGCGATTcggaat                                                                                                                                            >  2:460624/1‑144 (MQ=255)    aCATCTTATAAGGGTGGCAAAACTGACCGGGGATGCAAGCGAAACAGGGGAGGCATTGCTTAGATGATGACAGGTAATGGCGAGGCTGCGGAATGGTCTGCAGACAGAGAAAATCAGCCAGTTGAAATGGCAGTGCGCTTCTgggaagc                                                                                                                                         >  1:325133/1‑144 (MQ=255)     cATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTAAGATGATGACAGGTAATGGCGCGGATATCGACTGTTATGCAGACAGAGAAAATCAGGCTGTTCAAATGACTGTGCGATTGTGGTTAGcc                                                                                                                                        >  1:437459/1‑149 (MQ=255)      aTCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGccc                                                                                                                                       >  1:563389/1‑149 (MQ=255)          tatgggggTGGCAAAGGTCACCGGGGATGGGTGGGAAACAGGTGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGaaa                                                                                                                                   <  1:637553/144‑1 (MQ=255)          taaaaGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGaaa                                                                                                                                   <  2:529970/146‑1 (MQ=255)                ggTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGAAAGCCCGAAATAGTCa                                                                                                                             >  2:104780/1‑149 (MQ=255)                      aaaaCTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTACATGATGACAGGTAATGGCGCGGATATCGAGTGTTATGCACACAGAGAAAAACAGCCTGTTCAAATGGCGCTGCGATTCTGGATAGCCCGAAAGAATCAACTTCa                                                                                                                       >  2:261687/1‑149 (MQ=255)                        aaCTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAgg                                                                                                                     <  2:190125/149‑1 (MQ=255)                                             aaaCCGGGGAGGCATGGTTTCGGTGATGGCAGGTAGTGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAattat                                                                                                <  1:216131/149‑1 (MQ=255)                                                   gggAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCCGGCTATCCAGACAGCGGAATTATTCCggc                                                                                          >  2:184911/1‑147 (MQ=255)                                                   gggAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGcc                                                                                          >  2:612943/1‑149 (MQ=255)                                                   gggAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGGCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGcc                                                                                          >  1:620329/1‑149 (MQ=255)                                                   gggAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGACTGTTCAAATGGCTGTGCGATTCTGTGTAGCCGGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGcc                                                                                          >  1:106282/1‑149 (MQ=255)                                                     gAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGGTAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCaa                                                                                        >  1:79817/1‑149 (MQ=255)                                                          agtGCTTAGATGATGACAGGTGATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAAGCAGCCTGTTCAAATGGCTGGGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGc                                                                                   <  2:238190/147‑1 (MQ=255)                                                          aTTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTCGATAGACCGAAATAGTCAACTTCCGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGc                                                                                   <  2:569677/149‑1 (MQ=255)                                                                      atgaCAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGtt                                                                       <  1:612943/149‑1 (MQ=255)                                                                         acgggTAATGGGGCGGAGATCGGATGTTATGCAGACAGAGAAAATCAGTCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGACAAAGTGCGTTTTTGCTGTTCga                                                                    <  1:142372/146‑1 (MQ=255)                                                                         aCAGGTAACGGCGGGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCga                                                                    <  1:224323/149‑1 (MQ=255)                                                                           aGGTAATGTGGCGTATATATAATGTTTTGGAGAAAAATAAAAGCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCGATCCAGAGAGCGGAATTATTCCCCCAAAGTGCGTTTTTGCTGTTCgaga                                                                  <  2:205534/149‑1 (MQ=255)                                                                           aGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCgaga                                                                  >  2:335078/1‑149 (MQ=255)                                                                                  tgcgcGTATAGCGGATGTTATGCAGACAGAGAAAATCAGCAGGTTCAAATGGCTGTGGGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGtt                                                           <  1:416671/148‑1 (MQ=255)                                                                                     gtggAAATCGAGTGTTATGCAGACAGAGAAAATCAGCCGATTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGGCAACTTATAGCTGCCCAGAGCGCGGAAGTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCaa                                                        <  1:599637/147‑1 (MQ=255)                                                                                          tatCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCAATGCCg                                                   >  2:296035/1‑149 (MQ=255)                                                                                              gAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCTCGTTCGCGTTCAATGCCGTCAc                                               >  2:173194/1‑149 (MQ=255)                                                                                               aaTGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATGGCCCGCAATAGTCAACGTCAGGCCATCCAGAGAGCGGAATTATTCCGCCAAAGAGCGCTTTTGCTGTTCGAGACGGCCGTCAATGCCGTccgc                                              >  2:229294/1‑146 (MQ=255)                                                                                                 tGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCAATGCCGTCACGaa                                            >  1:279218/1‑149 (MQ=255)                                                                                                    tATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATc                                                                                                                <  1:358782/78‑1 (MQ=255)                                                                                                    tATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATc                                                                                                                >  2:358782/1‑78 (MQ=255)                                                                                                       gCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCAATGCCGTCACGAACATCCt                                      <  2:432169/149‑1 (MQ=255)                                                                                                          gacagaGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCAATGCCGTCACGAACATCCTggg                                   <  1:335078/149‑1 (MQ=255)                                                                                                               agaAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCAATGCCGTCACGAACATCCTGGGGGAtc                              <  2:514917/149‑2 (MQ=255)                                                                                                                     gcAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCAATGCCGTCACGAACATCCTGGGGGATTTTCAgc                        <  1:300951/148‑1 (MQ=255)                                                                                                                         ccTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGAGCGCGTTCAATGCCGTCACGAACATCCTGGGGGATTTTCAGCGCGt                    <  1:647117/149‑1 (MQ=255)                                                                                                                         ccTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCAGAATTATTCCGCCAAAGTGAGTTTTCGCTGTTCGCCATCGCGTTTAATGACGTCGCGAACATCCTGGGGGGTTTTCAgtccat                    >  2:240696/1‑144 (MQ=255)                                                                                                                               cAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCAATGCCGTCACGAACATCCTGGGGGATTTTCAGCGCGTCACCCa              <  1:296035/149‑1 (MQ=255)                                                                                                                                aaaTGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCaa                                                        <  1:524336/106‑1 (MQ=255)                                                                                                                                aaaTGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCaa                                                        >  2:524336/1‑106 (MQ=255)                                                                                                                                aaaTGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCAATGCCGTCACGAACATCCTGGGGGATTTTCAGCGCGTCACCCAg             >  1:364905/1‑149 (MQ=255)                                                                                                                                     gCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCAATGCCGTCACGAACATCCTGGGGGATTTTCAGCGCGTCACCCAGTGCAt        >  1:485784/1‑149 (MQ=255)                                                                                                                                         tgCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCAATGCCGTCACGAACATCCTGGGGGATTTTCAGCGCGTCACCCAGTGCATTCAg    >  1:111110/1‑149 (MQ=255)                                                                                                                                           cGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCCGAATTATTCCTCCAAAGTGCGTTTTTGCCGTTCGAGATCGCGTTCAATGCCGTCACGAACATCCTGGGGGATTTTCAGCGCGTCACCCAGTGCATTCAGGt  <  2:200928/149‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                 GAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCAATGCCGTCACGAACATCCTGGGGGATTTTCAGCGCGTCACCCAGTGCATTCAGGT  >  NC_000913_3_hsa_tpiA/1928859‑1929145

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.