New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA 1929001 =43 (1.110)3 (0.080) 3/266 5.6 6.8% intergenic (‑162/+47) ptrB/yebE protease II/DUF533 family inner membrane protein
?NC_000913_3_hsa_tpiA 1929040 = 43 (1.200)intergenic (‑201/+8) ptrB/yebE protease II/DUF533 family inner membrane protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCAATGCCGTCACGAACATCCTGGGGGATTTTCAGCGCGTCACCCAGTGCATTCAGGT  >  NC_000913_3_hsa_tpiA/1928859‑1929145
                                                                                                                                              |                                                                                                                                                
gAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGGCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCCGCCTGTTCAAGTGGCTGTGCGATTcggaat                                                                                                                                            >  2:460624/1‑144 (MQ=255)
   aCATCTTATAAGGGTGGCAAAACTGACCGGGGATGCAAGCGAAACAGGGGAGGCATTGCTTAGATGATGACAGGTAATGGCGAGGCTGCGGAATGGTCTGCAGACAGAGAAAATCAGCCAGTTGAAATGGCAGTGCGCTTCTgggaagc                                                                                                                                         >  1:325133/1‑144 (MQ=255)
    cATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTAAGATGATGACAGGTAATGGCGCGGATATCGACTGTTATGCAGACAGAGAAAATCAGGCTGTTCAAATGACTGTGCGATTGTGGTTAGcc                                                                                                                                        >  1:437459/1‑149 (MQ=255)
     aTCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGccc                                                                                                                                       >  1:563389/1‑149 (MQ=255)
         tatgggggTGGCAAAGGTCACCGGGGATGGGTGGGAAACAGGTGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGaaa                                                                                                                                   <  1:637553/144‑1 (MQ=255)
         taaaaGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGaaa                                                                                                                                   <  2:529970/146‑1 (MQ=255)
               ggTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGAAAGCCCGAAATAGTCa                                                                                                                             >  2:104780/1‑149 (MQ=255)
                     aaaaCTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTACATGATGACAGGTAATGGCGCGGATATCGAGTGTTATGCACACAGAGAAAAACAGCCTGTTCAAATGGCGCTGCGATTCTGGATAGCCCGAAAGAATCAACTTCa                                                                                                                       >  2:261687/1‑149 (MQ=255)
                       aaCTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAgg                                                                                                                     <  2:190125/149‑1 (MQ=255)
                                            aaaCCGGGGAGGCATGGTTTCGGTGATGGCAGGTAGTGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAattat                                                                                                <  1:216131/149‑1 (MQ=255)
                                                  gggAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCCGGCTATCCAGACAGCGGAATTATTCCggc                                                                                          >  2:184911/1‑147 (MQ=255)
                                                  gggAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGcc                                                                                          >  2:612943/1‑149 (MQ=255)
                                                  gggAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGGCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGcc                                                                                          >  1:620329/1‑149 (MQ=255)
                                                  gggAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGACTGTTCAAATGGCTGTGCGATTCTGTGTAGCCGGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGcc                                                                                          >  1:106282/1‑149 (MQ=255)
                                                    gAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGGTAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCaa                                                                                        >  1:79817/1‑149 (MQ=255)
                                                         agtGCTTAGATGATGACAGGTGATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAAGCAGCCTGTTCAAATGGCTGGGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGc                                                                                   <  2:238190/147‑1 (MQ=255)
                                                         aTTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTCGATAGACCGAAATAGTCAACTTCCGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGc                                                                                   <  2:569677/149‑1 (MQ=255)
                                                                     atgaCAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGtt                                                                       <  1:612943/149‑1 (MQ=255)
                                                                        acgggTAATGGGGCGGAGATCGGATGTTATGCAGACAGAGAAAATCAGTCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGACAAAGTGCGTTTTTGCTGTTCga                                                                    <  1:142372/146‑1 (MQ=255)
                                                                        aCAGGTAACGGCGGGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCga                                                                    <  1:224323/149‑1 (MQ=255)
                                                                          aGGTAATGTGGCGTATATATAATGTTTTGGAGAAAAATAAAAGCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCGATCCAGAGAGCGGAATTATTCCCCCAAAGTGCGTTTTTGCTGTTCgaga                                                                  <  2:205534/149‑1 (MQ=255)
                                                                          aGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCgaga                                                                  >  2:335078/1‑149 (MQ=255)
                                                                                 tgcgcGTATAGCGGATGTTATGCAGACAGAGAAAATCAGCAGGTTCAAATGGCTGTGGGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGtt                                                           <  1:416671/148‑1 (MQ=255)
                                                                                    gtggAAATCGAGTGTTATGCAGACAGAGAAAATCAGCCGATTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGGCAACTTATAGCTGCCCAGAGCGCGGAAGTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCaa                                                        <  1:599637/147‑1 (MQ=255)
                                                                                         tatCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCAATGCCg                                                   >  2:296035/1‑149 (MQ=255)
                                                                                             gAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCTCGTTCGCGTTCAATGCCGTCAc                                               >  2:173194/1‑149 (MQ=255)
                                                                                              aaTGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATGGCCCGCAATAGTCAACGTCAGGCCATCCAGAGAGCGGAATTATTCCGCCAAAGAGCGCTTTTGCTGTTCGAGACGGCCGTCAATGCCGTccgc                                              >  2:229294/1‑146 (MQ=255)
                                                                                                tGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCAATGCCGTCACGaa                                            >  1:279218/1‑149 (MQ=255)
                                                                                                   tATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATc                                                                                                                <  1:358782/78‑1 (MQ=255)
                                                                                                   tATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATc                                                                                                                >  2:358782/1‑78 (MQ=255)
                                                                                                      gCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCAATGCCGTCACGAACATCCt                                      <  2:432169/149‑1 (MQ=255)
                                                                                                         gacagaGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCAATGCCGTCACGAACATCCTggg                                   <  1:335078/149‑1 (MQ=255)
                                                                                                              agaAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCAATGCCGTCACGAACATCCTGGGGGAtc                              <  2:514917/149‑2 (MQ=255)
                                                                                                                    gcAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCAATGCCGTCACGAACATCCTGGGGGATTTTCAgc                        <  1:300951/148‑1 (MQ=255)
                                                                                                                        ccTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGAGCGCGTTCAATGCCGTCACGAACATCCTGGGGGATTTTCAGCGCGt                    <  1:647117/149‑1 (MQ=255)
                                                                                                                        ccTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCAGAATTATTCCGCCAAAGTGAGTTTTCGCTGTTCGCCATCGCGTTTAATGACGTCGCGAACATCCTGGGGGGTTTTCAgtccat                    >  2:240696/1‑144 (MQ=255)
                                                                                                                              cAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCAATGCCGTCACGAACATCCTGGGGGATTTTCAGCGCGTCACCCa              <  1:296035/149‑1 (MQ=255)
                                                                                                                               aaaTGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCaa                                                        <  1:524336/106‑1 (MQ=255)
                                                                                                                               aaaTGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCaa                                                        >  2:524336/1‑106 (MQ=255)
                                                                                                                               aaaTGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCAATGCCGTCACGAACATCCTGGGGGATTTTCAGCGCGTCACCCAg             >  1:364905/1‑149 (MQ=255)
                                                                                                                                    gCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCAATGCCGTCACGAACATCCTGGGGGATTTTCAGCGCGTCACCCAGTGCAt        >  1:485784/1‑149 (MQ=255)
                                                                                                                                        tgCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCAATGCCGTCACGAACATCCTGGGGGATTTTCAGCGCGTCACCCAGTGCATTCAg    >  1:111110/1‑149 (MQ=255)
                                                                                                                                          cGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCCGAATTATTCCTCCAAAGTGCGTTTTTGCCGTTCGAGATCGCGTTCAATGCCGTCACGAACATCCTGGGGGATTTTCAGCGCGTCACCCAGTGCATTCAGGt  <  2:200928/149‑1 (MQ=255)
                                                                                                                                              |                                                                                                                                                
GAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAGGCTATCCAGAGAGCGGAATTATTCCGCCAAAGTGCGTTTTTGCTGTTCGAGATCGCGTTCAATGCCGTCACGAACATCCTGGGGGATTTTCAGCGCGTCACCCAGTGCATTCAGGT  >  NC_000913_3_hsa_tpiA/1928859‑1929145

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.