New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	2373111 =	41 (1.060)	4 (0.110)	4/278	5.3	8.8%	coding (220/387 nt)	arnF	undecaprenyl phosphate‑alpha‑L‑ara4N exporter; flippase ArnEF subunit
	?	NC_000913_3_hsa_tpiA	2373131 =	43 (1.150)					coding (240/387 nt)	arnF	undecaprenyl phosphate‑alpha‑L‑ara4N exporter; flippase ArnEF subunit
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAGTCATCTGCCGCCGATGACGCACTTATGGGATTTTATCGCGGCTCTGTTAGCTTTTGGCCTGGATGCCCGGATACTGTTACTCGGGCTGCTGGGTTATCTGCTTTCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAGGGACTTTTTCGCTGAAAGCACTACTGGGAGTAGCCTGTATTATGAGCGGGTTGATGCTGATTTTC  >  NC_000913_3_hsa_tpiA/2372963‑2373251                                                                                                                                                     |                                                                                                                                             gactCAGCTGCCGCCGATCACGCACTTATGGGATCTTATCGCGGCTCTGTTAGCTTTTGGCCTTGATGCCCGGATACTGTTACCCGGGCTGCTGGGTTATCTGCTGGCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTaa                                                                                                                                              <  2:53809/146‑1 (MQ=255)      aTCTGGCGGCGATGATGGACTTTGGGGAGTTTAGCGCGGCTCTGTTAGCTTTTGGCCTGGATGCCCGGATACTGTTACTCGGGCTGCTGGGTTATCTGCTTTCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCaaa                                                                                                                                         <  2:49667/149‑1 (MQ=255)       tCTGCCGCCGATGACGCACTTATGGGATTTTATCGCGGCTCTGTTAGCTTTTGGCCTGGATGCCCGGATACTGTTACTCGGGCTGCTGGGTTATCTGCTTTCCGTTTTTTGTTGGTATAAAACGCTTCATACACTTGCGCTAAGCAAAg                                                                                                                                        >  1:264881/1‑149 (MQ=255)                      gCACTTATGGGATTTTATCGCGGCTCTGTTAGCTTTTGGCCTGGATGCCCGGATACTGTTACTCGGGCTGCTGGGTTATCTGCTTTCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCa                                                                                                                         <  1:665618/149‑1 (MQ=255)                         cTTATGGTATTTTATCGCGGCTCTGTTAGCTTTTGGCCTGGATGCCCGGATACTGTTACTCGGGCTGCTGGGTTATCTGCTTTCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTa                                                                                                                      <  2:402221/149‑1 (MQ=255)                            aTGGGATTTTATCGCGGCTCTGTTGGCTTGTGGCCTGGATGCCCGGATACTGTTACTCGGGCTGCTGGGTTATCTGCTTTCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGa                                                                                                                   <  2:638835/149‑1 (MQ=255)                            aTGGGATTTTATCGCGGCTCTGTTAGCTTTTGGCCTGGATGCCCGGATACTGTTACTCGGGCTGCTGGGTTACCTGCTTTCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGa                                                                                                                   <  1:196402/149‑1 (MQ=255)                                      aTCGCGGCTCTGTTAGCTTTTGGCCTGGATGCCCGGATACTGTTACTCGGGCTGCTGGGTTATCTGCTTTCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCGAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCt                                                                                                         >  1:286405/1‑149 (MQ=255)                                       tCGCGGCTCTGATATCTTTGGGCCTGGATGCCCGGATACTGTTACTCGCGCTGCTGGGTTATCTGCTTGCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTg                                                                                                        <  1:231284/149‑1 (MQ=255)                                         gcgGCTCTGTTAGCTTTTGGCCTGGATGCCCGGATACTGTTACTCGGGCTGCTGGGTTATCTGCTTTCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGt                                                                                                      >  1:632486/1‑149 (MQ=255)                                                  ttAGCTTTTGGCCTGGATGCCCGGATACTGTTACTCGGGCTGCTGGGTTATCTGCTTTCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGc                                                                                             >  1:668731/1‑149 (MQ=255)                                                    aGCTTTTGGCCTGGATGCCCGGATACTGTTACTCGGGCTGCTGGGTTATCTGCTTTCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCtt                                                                                           <  2:584734/149‑1 (MQ=255)                                                     gCTTTTGGCCTGGATGCCCGGATACTGTTACTCGGGCTGCTGGGTTATCTGCTTTCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCATGTGCCTTGCGCAGTATGAGTTATGTGCTGGTATGGATTGCTTc                                                                                          >  1:353582/1‑149 (MQ=255)                                                          tGGCCTGGATGCCCGGATACTGTTACTCGGGCTGCTGGGTTATCTGCTTTCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATgg                                                                                     <  2:178020/149‑1 (MQ=255)                                                            gCCTGGATGCCCGGATACTGTTACTCGGGCTGCTGGGTTATCTGCTTTCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTa                                                                                   <  1:288842/149‑1 (MQ=255)                                                            gCCTGGATGCCCGGATACTGGTACTCGGGCTGCTGGGTTATCTGCTTTCCGTTTTTTGTTGGTATAAAACGTTTCATAAACTTGCGCTCAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGtc                                                                                   <  2:544116/149‑2 (MQ=255)                                                                    gCCCGGCCACTGTTCCTAGGGCATCTTGGTGATCTGCTGTCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTACTTCCCgg                                                                           <  2:671507/149‑1 (MQ=255)                                                                      ccGGATACTGTTACTCGGGCTGCTGGGTTATCTGCTTTCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTACTTCCCGGCt                                                                         >  1:450267/1‑149 (MQ=255)                                                                            aCTTTTACTCGGGCTGCTGGGTTATCTGCTTTCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAg                                                                   <  1:367099/149‑1 (MQ=255)                                                                            aCTTTTACTCGGGCTGCTGGGTTATCTGCTTTCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAg                                                                   <  2:36718/149‑1 (MQ=255)                                                                               gTTACTCGGGCTGCTGGGTTATCTGCTTTCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGATCAGAATGAATTATGTGCTGGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAGGGa                                                                <  1:528380/149‑1 (MQ=255)                                                                                ttACTCGGGCTGCTGGGTTATCTGCTTTCCGTTTTTTTTTTTTTTTTTCCGCTTCATAAACTTTCGCTAAGAAACGCCTATGCCTTGCTTAGTATGAGTTATGTTCTGGTATGGATTGCTGCACTGGTTCTTCCCGGCTgggccgggtc                                                               >  2:336495/1‑142 (MQ=255)                                                                                      gagctgctGGGTTATCTGCTTTCCGATTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCTGATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTACTTCACGGCTGGGAAGGAACTTTTTc                                                         >  2:225253/3‑149 (MQ=255)                                                                                                gTTATCTGGTTTCCGTTTTTTGTGGGTATAAAACGCTTCATGAACTTGCGCTAGGCAAAGCCGATGCCTTTCTCAGTATGAGTTATGTGCTTGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAGGGACTTTTTCGCTGAAAGCa                                               <  2:596784/149‑1 (MQ=255)                                                                                                    tCTGCTTTCCGTTTTTTTTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAGGGACTTTTTCGCTGAAAGCactac                                           <  1:670859/149‑1 (MQ=255)                                                                                                    tCTGCTTTCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAGGGACTTTTTCGCTGAAAGCactac                                           <  1:670853/149‑1 (MQ=255)                                                                                                           tCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGa                                                                                                 <  2:165735/88‑1 (MQ=255)                                                                                                           tCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGa                                                                                                 >  1:165735/1‑88 (MQ=255)                                                                                                                     gttgGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAGGGACTTTTTCGCTGAAAGCACTACTGGGAGTAGCCTGtatt                          >  1:609275/1‑149 (MQ=255)                                                                                                                     gttgGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAATATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAGGGACTTTTTCGCTGAAAGCACTACTGGGAGTAGCCTGtatt                          <  1:579040/149‑1 (MQ=255)                                                                                                                          tataAAACGTTTCATAAACTTGCGCTAAGCAAAGCCTATTCCTTGGTCAGTATGAGTTATGTGCTGGGATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAGGGACTTTTTCGCTGAAAGCACTACTGGGAGTAGCCTGTATTATGAg                     <  2:561244/149‑1 (MQ=255)                                                                                                                           ataAAACGCTTCATATACTTGCGGTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAGGGATTTTTTCGCTGAAAGCACTACTGGGAGTAGCCTGTATTATGAGc                    <  2:346109/149‑1 (MQ=255)                                                                                                                            taAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAGGGACTTTTTCGCTGAAAGCACTCCTGGGAGGAGCCTGTATTATGAGCg                   >  2:16555/1‑149 (MQ=255)                                                                                                                             aaacCGCTTCGTAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAGGGACTTTTTCGCTGAAAGCACTACTGGGAGTAGCCTGTATTATGAGCgg                  <  2:53772/149‑1 (MQ=255)                                                                                                                             aaaaCGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAGGGACTTTTTCGCTGAAAGCACTACTGGGAGTAGCCTGTATTATGAGCgg                  >  2:258618/1‑149 (MQ=255)                                                                                                                                  gctgcctAAACGTGCGCTAAGCAAGGCGTGTGCCTTGGTCAGTGGTAGTTGTGTGCTGGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAGGTACTTTTTCGTTGAAAGCACTACTGGGAGTAGCGTGTATTATGAGCGGGTTGa             <  2:558857/143‑1 (MQ=255)                                                                                                                                    ttCATAAACTTGCACTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAGGGACTTTTTCGCTGAAAGCACTACTGGGAGTAGCCTGTATTATGAGCGGGTTGATg           >  1:544315/1‑149 (MQ=255)                                                                                                                                     tCATAAGCGTGCGATAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGGTGGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAGGGACTTTTTCGCTGAAAGCACTACTGGGAGTAGCCTGTATTATGAGCGGGTTGATGc          <  2:89105/149‑1 (MQ=255)                                                                                                                                       aTAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAGGGACTTTTTCGCTGAAAGCACTACTGGGAGTAGc                                 >  2:572357/1‑124 (MQ=255)                                                                                                                                       aTAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAGGGACTTTTTCGCTGAAAGCACTACTGGGAGTAGc                                 <  1:572357/124‑1 (MQ=255)                                                                                                                                             ttGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAGGGACTTTTTCGCTGAAAGCACTACTGGGAGTAGCCTGTATTATGAGCGGGTTGATGCTGATTTTc  >  2:390667/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                             GAGTCATCTGCCGCCGATGACGCACTTATGGGATTTTATCGCGGCTCTGTTAGCTTTTGGCCTGGATGCCCGGATACTGTTACTCGGGCTGCTGGGTTATCTGCTTTCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAGGGACTTTTTCGCTGAAAGCACTACTGGGAGTAGCCTGTATTATGAGCGGGTTGATGCTGATTTTC  >  NC_000913_3_hsa_tpiA/2372963‑2373251

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.