New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	2373111 =	41 (1.060)	4 (0.110)	4/278	5.3	8.8%	coding (220/387 nt)	arnF	undecaprenyl phosphate‑alpha‑L‑ara4N exporter; flippase ArnEF subunit
	?	NC_000913_3_hsa_tpiA	2373131 =	43 (1.150)					coding (240/387 nt)	arnF	undecaprenyl phosphate‑alpha‑L‑ara4N exporter; flippase ArnEF subunit
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCACTTATGGGATTTTATCGCGGCTCTGTTAGCTTTTGGCCTGGATGCCCGGATACTGTTACTCGGGCTGCTGGGTTATCTGCTTTCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAGGGACTTTTTCGCTGAAAGCACTACTGGGAGTAGCCTGTATTATGAGCGGGTTGATGCTGATTTTCCTGCCCACGACAAAACAACGTTACTGA  >  NC_000913_3_hsa_tpiA/2372984‑2373278                                                                                                                                                    |                                                                                                                                                    gCACTTATGGGATTTTATCGCGGCTCTGTTAGCTTTTGGCCTGGATGCCCGGATACTGTTACTCGGGCTGCTGGGTTATCTGCTTTCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCa                                                                                                                                                    <  1:665618/149‑1 (MQ=255)    cTTATGGTATTTTATCGCGGCTCTGTTAGCTTTTGGCCTGGATGCCCGGATACTGTTACTCGGGCTGCTGGGTTATCTGCTTTCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTa                                                                                                                                                 <  2:402221/149‑1 (MQ=255)       aTGGGATTTTATCGCGGCTCTGTTGGCTTGTGGCCTGGATGCCCGGATACTGTTACTCGGGCTGCTGGGTTATCTGCTTTCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGa                                                                                                                                              <  2:638835/149‑1 (MQ=255)       aTGGGATTTTATCGCGGCTCTGTTAGCTTTTGGCCTGGATGCCCGGATACTGTTACTCGGGCTGCTGGGTTACCTGCTTTCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGa                                                                                                                                              <  1:196402/149‑1 (MQ=255)                 aTCGCGGCTCTGTTAGCTTTTGGCCTGGATGCCCGGATACTGTTACTCGGGCTGCTGGGTTATCTGCTTTCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCGAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCt                                                                                                                                    >  1:286405/1‑149 (MQ=255)                  tCGCGGCTCTGATATCTTTGGGCCTGGATGCCCGGATACTGTTACTCGCGCTGCTGGGTTATCTGCTTGCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTg                                                                                                                                   <  1:231284/149‑1 (MQ=255)                    gcgGCTCTGTTAGCTTTTGGCCTGGATGCCCGGATACTGTTACTCGGGCTGCTGGGTTATCTGCTTTCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGt                                                                                                                                 >  1:632486/1‑149 (MQ=255)                             ttAGCTTTTGGCCTGGATGCCCGGATACTGTTACTCGGGCTGCTGGGTTATCTGCTTTCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGc                                                                                                                        >  1:668731/1‑149 (MQ=255)                               aGCTTTTGGCCTGGATGCCCGGATACTGTTACTCGGGCTGCTGGGTTATCTGCTTTCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCtt                                                                                                                      <  2:584734/149‑1 (MQ=255)                                gCTTTTGGCCTGGATGCCCGGATACTGTTACTCGGGCTGCTGGGTTATCTGCTTTCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCATGTGCCTTGCGCAGTATGAGTTATGTGCTGGTATGGATTGCTTc                                                                                                                     >  1:353582/1‑149 (MQ=255)                                     tGGCCTGGATGCCCGGATACTGTTACTCGGGCTGCTGGGTTATCTGCTTTCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATgg                                                                                                                <  2:178020/149‑1 (MQ=255)                                       gCCTGGATGCCCGGATACTGTTACTCGGGCTGCTGGGTTATCTGCTTTCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTa                                                                                                              <  1:288842/149‑1 (MQ=255)                                       gCCTGGATGCCCGGATACTGGTACTCGGGCTGCTGGGTTATCTGCTTTCCGTTTTTTGTTGGTATAAAACGTTTCATAAACTTGCGCTCAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGtc                                                                                                              <  2:544116/149‑2 (MQ=255)                                               gCCCGGCCACTGTTCCTAGGGCATCTTGGTGATCTGCTGTCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTACTTCCCgg                                                                                                      <  2:671507/149‑1 (MQ=255)                                                 ccGGATACTGTTACTCGGGCTGCTGGGTTATCTGCTTTCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTACTTCCCGGCt                                                                                                    >  1:450267/1‑149 (MQ=255)                                                       aCTTTTACTCGGGCTGCTGGGTTATCTGCTTTCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAg                                                                                              <  1:367099/149‑1 (MQ=255)                                                       aCTTTTACTCGGGCTGCTGGGTTATCTGCTTTCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAg                                                                                              <  2:36718/149‑1 (MQ=255)                                                          gTTACTCGGGCTGCTGGGTTATCTGCTTTCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGATCAGAATGAATTATGTGCTGGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAGGGa                                                                                           <  1:528380/149‑1 (MQ=255)                                                           ttACTCGGGCTGCTGGGTTATCTGCTTTCCGTTTTTTTTTTTTTTTTTCCGCTTCATAAACTTTCGCTAAGAAACGCCTATGCCTTGCTTAGTATGAGTTATGTTCTGGTATGGATTGCTGCACTGGTTCTTCCCGGCTgggccgggtc                                                                                          >  2:336495/1‑142 (MQ=255)                                                                 gagctgctGGGTTATCTGCTTTCCGATTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCTGATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTACTTCACGGCTGGGAAGGAACTTTTTc                                                                                    >  2:225253/3‑149 (MQ=255)                                                                           gTTATCTGGTTTCCGTTTTTTGTGGGTATAAAACGCTTCATGAACTTGCGCTAGGCAAAGCCGATGCCTTTCTCAGTATGAGTTATGTGCTTGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAGGGACTTTTTCGCTGAAAGCa                                                                          <  2:596784/149‑1 (MQ=255)                                                                               tCTGCTTTCCGTTTTTTTTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAGGGACTTTTTCGCTGAAAGCactac                                                                      <  1:670859/149‑1 (MQ=255)                                                                               tCTGCTTTCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAGGGACTTTTTCGCTGAAAGCactac                                                                      <  1:670853/149‑1 (MQ=255)                                                                                      tCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGa                                                                                                                            >  1:165735/1‑88 (MQ=255)                                                                                      tCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGa                                                                                                                            <  2:165735/88‑1 (MQ=255)                                                                                                gttgGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAGGGACTTTTTCGCTGAAAGCACTACTGGGAGTAGCCTGtatt                                                     >  1:609275/1‑149 (MQ=255)                                                                                                gttgGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAATATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAGGGACTTTTTCGCTGAAAGCACTACTGGGAGTAGCCTGtatt                                                     <  1:579040/149‑1 (MQ=255)                                                                                                     tataAAACGTTTCATAAACTTGCGCTAAGCAAAGCCTATTCCTTGGTCAGTATGAGTTATGTGCTGGGATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAGGGACTTTTTCGCTGAAAGCACTACTGGGAGTAGCCTGTATTATGAg                                                <  2:561244/149‑1 (MQ=255)                                                                                                      ataAAACGCTTCATATACTTGCGGTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAGGGATTTTTTCGCTGAAAGCACTACTGGGAGTAGCCTGTATTATGAGc                                               <  2:346109/149‑1 (MQ=255)                                                                                                       taAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAGGGACTTTTTCGCTGAAAGCACTCCTGGGAGGAGCCTGTATTATGAGCg                                              >  2:16555/1‑149 (MQ=255)                                                                                                        aaacCGCTTCGTAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAGGGACTTTTTCGCTGAAAGCACTACTGGGAGTAGCCTGTATTATGAGCgg                                             <  2:53772/149‑1 (MQ=255)                                                                                                        aaaaCGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAGGGACTTTTTCGCTGAAAGCACTACTGGGAGTAGCCTGTATTATGAGCgg                                             >  2:258618/1‑149 (MQ=255)                                                                                                             gctgcctAAACGTGCGCTAAGCAAGGCGTGTGCCTTGGTCAGTGGTAGTTGTGTGCTGGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAGGTACTTTTTCGTTGAAAGCACTACTGGGAGTAGCGTGTATTATGAGCGGGTTGa                                        <  2:558857/143‑1 (MQ=255)                                                                                                               ttCATAAACTTGCACTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAGGGACTTTTTCGCTGAAAGCACTACTGGGAGTAGCCTGTATTATGAGCGGGTTGATg                                      >  1:544315/1‑149 (MQ=255)                                                                                                                tCATAAGCGTGCGATAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGGTGGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAGGGACTTTTTCGCTGAAAGCACTACTGGGAGTAGCCTGTATTATGAGCGGGTTGATGc                                     <  2:89105/149‑1 (MQ=255)                                                                                                                  aTAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAGGGACTTTTTCGCTGAAAGCACTACTGGGAGTAGc                                                            >  2:572357/1‑124 (MQ=255)                                                                                                                  aTAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAGGGACTTTTTCGCTGAAAGCACTACTGGGAGTAGc                                                            <  1:572357/124‑1 (MQ=255)                                                                                                                        ttGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAGGGACTTTTTCGCTGAAAGCACTACTGGGAGTAGCCTGTATTATGAGCGGGTTGATGCTGATTTTc                             >  2:390667/1‑149 (MQ=255)                                                                                                                                    aaGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAGGGACTTATTCGCTGAACGCACTTTCCGCATGAGCCTGTTTTATGAGCGGGTTGATGCTGATTTTCCTGCCCACGACa                 >  1:128352/1‑149 (MQ=255)                                                                                                                                      gCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAGGGACTTTTTCGCTGAAAGCac                                                                         <  1:75848/91‑1 (MQ=255)                                                                                                                                      gCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAGGGACTTTTTCGCTGAAAGCac                                                                         >  2:75848/1‑91 (MQ=255)                                                                                                                                       ccTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAGGGACTTTTTCGCTGAAAGCACTACTGGGAGTAGCCTGTATTATGAGCGGGTTGATGCTGATTTTCCTGCCCACGACaaaa              <  2:632486/149‑1 (MQ=255)                                                                                                                                         tATGCCTTGCTCAGTCTCGGTGATCTGGTGGTATGGATTGCTTTAATGGTACCTCCGGGCTGGGAAGGGAC‑TTTGCGCTGAAAGCACTCCTGGGAGTAGCCCGTAGTAAGAGCGGATTGATGCTGATTTTCCTGCCCACGACAAaacaa           <  2:475253/149‑1 (MQ=255)                                                                                                                                          aggctttGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAGGGACTTTTTCGCTGAAAGCACTACTGGGAGTAGCCTGTATTATGAGCGGGTTGATGCTGATTTTCCTGCCCACGACAAaacaa           <  2:229791/144‑1 (MQ=255)                                                                                                                                                   tCAGTAGGAGTTGTGTGCTGGTATGGATTTCTTCAATGGTACTTCCCGGCTGGGAAGGGACTTTTTCGCTGAAAGCACTACTGTGAGTAGTCTGTATTATGAGCGGGTTGATGCTGATTTTCCTGCCCACGACAAAACAACGTTACTGa  <  1:640963/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    GCACTTATGGGATTTTATCGCGGCTCTGTTAGCTTTTGGCCTGGATGCCCGGATACTGTTACTCGGGCTGCTGGGTTATCTGCTTTCCGTTTTTTGTTGGTATAAAACGCTTCATAAACTTGCGCTAAGCAAAGCCTATGCCTTGCTCAGTATGAGTTATGTGCTGGTATGGATTGCTTCAATGGTACTTCCCGGCTGGGAAGGGACTTTTTCGCTGAAAGCACTACTGGGAGTAGCCTGTATTATGAGCGGGTTGATGCTGATTTTCCTGCCCACGACAAAACAACGTTACTGA  >  NC_000913_3_hsa_tpiA/2372984‑2373278

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.