New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 4372595	43 (1.110)	3 (0.080)	3/278	5.8	6.6%	coding (1589/1647 nt)	groL	Cpn60 chaperonin GroEL, large subunit of GroESL
	?	NC_000913_3_hsa_tpiA	= 4372605	44 (1.180)					coding (1599/1647 nt)	groL	Cpn60 chaperonin GroEL, large subunit of GroESL
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAACCCCCGGGCAGAAATGTCTGGGGGTTTTTCTTTTGGTCATCTTTCTAGTATAAGATTCAGACACGGACGA  >  NC_000913_3_hsa_tpiA/4372462‑4372752                                                                                                                                                |                                                                                                                                                    ggCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTGCCGACCGTCCGAAAAACGATGCAGCTGACTTAGGCgctgc                                                                                                                                                >  1:16464/1‑149 (MQ=255)    aaCATGATCGACATGGAAATCCTCGCTCCAACCAGAGTAACTCGTTCTGCTCTGCAGTACGCAGCGTCGGGGGCTGGCCTGATGCACACCACGCAATGCATCGTTACCGACCTGCCGTAAACCGCTGCAGCTGACTCACGCgctcatgc                                                                                                                                             >  2:61796/1‑144 (MQ=255)            cGACATGGGTATCCTGGATCCAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGTCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATgg                                                                                                                                     <  2:538847/149‑1 (MQ=255)                         cTGGATCCAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGCCCCGCCGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTgg                                                                                                                        >  1:492546/1‑149 (MQ=255)                             aTCCAACCAAAGTAACTCGTTCTGCTCTGCAGGACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATg                                                                                                                    <  1:154971/149‑1 (MQ=255)                              tCCAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATgg                                                                                                                   >  1:430665/1‑149 (MQ=255)                              tCCAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGGGGCTTgg                                                                                                                   >  1:22590/1‑149 (MQ=255)                                   ttaaaGGAACTCGTGTCGCCCGGCAGTATGCAGCTTCTGTGGCTGGCCCGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAACGATGCAGCTGACTTAGGCGCTGATGGCGGTATGGGCGGCATGGGTGGCATGggcggc                                                                                                              <  2:194051/147‑1 (MQ=255)                                    caaAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCa                                                                                                             <  2:157395/149‑1 (MQ=255)                                    caaAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAACGAGGCAGCTGACTTATGCGCTGCTGGCGGTATGGGGGGCATGGGTGGCATGGGGGGCa                                                                                                             >  2:97139/1‑149 (MQ=255)                                      aaGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCatg                                                                                                           <  1:419448/149‑1 (MQ=255)                                            cTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGTTCACCACCGAATGCATGGTTACCGACCTGCCGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTaa                                                                                                     >  2:543457/1‑149 (MQ=255)                                            cTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGACGGCCTGAGGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTaa                                                                                                     <  1:353459/149‑1 (MQ=255)                                                  ctggccagcAGTACGCAGCTGCTGTGGCTGGCCGGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGccc                                                                                               <  2:99889/142‑1 (MQ=255)                                                             tACGCCGCTTCTGGGGCTGGCCGGTGGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCa                                                                                    <  2:369824/149‑1 (MQ=255)                                                              aCGCAGCGTCTGTGGCAGGTCTGATTATCACAACCTAATGCATGGTTACCGACATGCAGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAg                                                                                   <  2:522167/149‑1 (MQ=255)                                                                        tgtgGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCCCGCAGAAATaaacaa                                                                         >  1:368178/1‑149 (MQ=255)                                                                         gtgGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATggg                                                                                                                                    >  1:590240/1‑89 (MQ=255)                                                                         gtgGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATggg                                                                                                                                    <  2:590240/89‑1 (MQ=255)                                                                              tggcCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAACGATGCAGCTGAATTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCTCTGCACCTCGCAGAAATaaacaaaacacc                                                                   >  2:198432/1‑144 (MQ=255)                                                                                  cTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCCCCTCGCAGAAATAAACAAACCCCCGGGc                                                               >  2:295358/1‑149 (MQ=255)                                                                                             caccGAATGCATGGTTACCGACCTGCCGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGACAGAAACAAACCCCCGGGCGGAAATGTCTg                                                    >  2:370974/1‑149 (MQ=255)                                                                                                cGAATGCATGGTTACCGACCTGCCGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAACCCCCGGGCAGAAATGTCTgggg                                                 <  2:16464/149‑1 (MQ=255)                                                                                                  aaTGCATGGTTACCGACCTGCCGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAACCCCCggg                                                                >  2:155734/1‑132 (MQ=255)                                                                                                  aaTGCATGGTTACCGACCTGCCGAAAAACGATGCAGATGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAACCCCCggg                                                                <  1:155734/132‑1 (MQ=255)                                                                                                   aTGCATGGTTACCGACCTGCCGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAACCCCCGGGCAGAAATGTCTGGGGGtt                                              >  1:488204/1‑149 (MQ=255)                                                                                                         ggTTACCGACCTGCCGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAACCAAACCCCCGGGCAGAAATGTCTGGGGGTTTTTcgt                                        >  1:668542/1‑147 (MQ=255)                                                                                                         ggTTACCGACCTGCCGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAACCCCCGGGCAGAAATGTCTGGGGGTTTTTCtt                                        <  1:111021/149‑1 (MQ=255)                                                                                                            tACCGACCTGGCGAAAAACGATGCAGTGGCCTCAGGAGCCGCTGGTGGTATGGGCGGCAGAGGGGGCATAGGGGGCATGATGTAAGTGCCCTGCACCTCGCAGAAATAAACAAACCCCCGGGCAGAAATGTCTGGGGGTTTTTCTTTTg                                     <  2:60251/149‑1 (MQ=255)                                                                                                            tACCGACCGGCCGAAAAACGATGCAGCTGACCTAGGCGCTGCGGGAGGTACGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTCCCCTGCACTTCGCAGAAATAAACAAACCCCCGTGCTGAAATGTCTGGGGGTTTTTCTTTTg                                     <  2:57389/149‑1 (MQ=255)                                                                                                            cgactagcTGCCGAAAGACGAGGCAGCTAGATTAGGCGCTGCTGGCGGTATGGGCTGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAACCCCCGGGCAGAAATGTCTGGGGGTTTTTCTTTTg                                     <  2:166586/142‑1 (MQ=255)                                                                                                             aCCGACCTGCCGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAACCCCCGGGCAGAAATGTCTGGGGGTTTTTCTTTTgg                                    <  1:397590/149‑1 (MQ=255)                                                                                                              ccGACCTGCCGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAAGAGCCCTGCACCTCGCAGAAATAAACAAACCCCCGGGCAGAAATGTCTGGGGGTTTTTCTTTTGGt                                   <  1:97139/149‑1 (MQ=255)                                                                                                               cggccTGGCGAAAAAGGATGCAGCTGACTTAGGCGCGGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAACCCCCGGGCAGAAATGTCTGGGGGTTTTTCTTTTGGTc                                  <  2:656605/146‑1 (MQ=255)                                                                                                                        gAAAAACGATGCAGCTTACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAACCCCCTGGCATAAATGTCTGGGGGTTTTTCTTTTGGTCATCTTTCTa                         <  1:513019/149‑1 (MQ=255)                                                                                                                        gAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAACCCCCGGGCAGAAATGTCTGGGGGTTTTTCTTTTg                                     >  2:507233/1‑137 (MQ=255)                                                                                                                        gAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAACCCCCGGGCAGAAATGTCTGGGGGTTTTTCTTTTg                                     <  1:507233/137‑1 (MQ=255)                                                                                                                         aaaaaCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGGGGCATGGTGTGATTGCCGTGGACGTCGCAGGAATAAACAAACCCCCGGGCAGAGATGTCTGGGGGTTTTTATTTTGGTCTTCTTTCTAg                        >  2:500520/1‑149 (MQ=255)                                                                                                                                 tGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAACCCCCGGGCAGAAATGTCTGGGGGTTTTTCTTTTGGTCATCTTTCTAGTATAAGAt                >  1:595561/1‑149 (MQ=255)                                                                                                                                  gCAGCTGACTTAGGCGGTGGTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAACCCCCGGGCAGAAATGTCTGGGGGTTTTTCTTTTGGTCATCTTTCTAGTATAAGAtt               <  2:424995/149‑1 (MQ=255)                                                                                                                                    aGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCa                                                                                    >  1:633580/1‑78 (MQ=255)                                                                                                                                    aGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCa                                                                                    <  2:633580/78‑1 (MQ=255)                                                                                                                                      cTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAACCCCCGGGCAGAAATGTCTGGGGGTTTTTCTTTTGGTCATCTTTCTAGTATAAGATTCAGa           >  1:226287/1‑149 (MQ=255)                                                                                                                                       tGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAACCCCCGGGCAGAAATGTCTGGGGGTTTTTCTTTTGGTCATATTTCTACTCTAAGAttaggcg          >  2:166687/1‑144 (MQ=255)                                                                                                                                           ttAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAACCCCCGGGCAGAAATGTCTGGGGGTTTTTCTTTTGGTCATCTTTCTAGTATAAGATTCAGACACgg      >  1:168690/1‑149 (MQ=255)                                                                                                                                               gcgcGGCTGGCGGTATGGGCCGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCGGCACCTCGCAGAAATAAACAAACCCCCGGGCAGAAATGACTGGGGGTTTTTCTTTTGGTCATCTTTCTAGTATAAGATTCAGACACGgacga  <  2:144683/149‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                    GGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAACCCCCGGGCAGAAATGTCTGGGGGTTTTTCTTTTGGTCATCTTTCTAGTATAAGATTCAGACACGGACGA  >  NC_000913_3_hsa_tpiA/4372462‑4372752

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.