mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_hsa_tpiA | 4,296,042 | 0 | C | T | 26.3% | 269.4 / 112.5 | 172 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913_3_hsa_tpiA | 223,854 | 0 | T | A | 25.9% | 38.9 / 18.4 | 27 | noncoding (84/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| * | NC_000913_3_hsa_tpiA | 223,855 | 0 | T | A | 25.9% | 39.0 / 17.1 | 27 | noncoding (85/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| Marginal new junction evidence (lowest skew 10 of 758 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | = 1097101 | 86 (0.730) | 39 (0.350) | 23/258 | 8.9 | 40.2% | intergenic (+272/+464) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_hsa_tpiA | = 1097467 | 35 (0.310) | intergenic (+638/+98) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 1097101 | 86 (0.730) | 39 (0.350) | 23/258 | 8.9 | 31.8% | intergenic (+272/+464) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_hsa_tpiA | = 1097105 | 86 (0.770) | intergenic (+276/+460) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 1097101 | 86 (0.730) | 38 (0.340) | 22/258 | 9.3 | 42.0% | intergenic (+272/+464) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_hsa_tpiA | = 1097286 | 24 (0.220) | intergenic (+457/+279) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 1207805 | 98 (0.830) | 21 (0.200) | 19/242 | 9.6 | 20.2% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_hsa_tpiA | = 1209602 | 79 (0.760) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_hsa_tpiA | 1207790 = | 102 (0.860) | 20 (0.190) | 19/242 | 9.6 | 18.9% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_hsa_tpiA | 1209619 = | 81 (0.780) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 1097463 | 41 (0.350) | 37 (0.330) | 21/258 | 9.6 | 50.1% | intergenic (+634/+102) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_hsa_tpiA | = 1097467 | 35 (0.310) | intergenic (+638/+98) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 1097113 | 95 (0.800) | 37 (0.330) | 21/258 | 9.6 | 37.1% | intergenic (+284/+452) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_hsa_tpiA | = 1097455 | 36 (0.320) | intergenic (+626/+110) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 1097294 | 37 (0.310) | 36 (0.320) | 20/258 | 10.0 | 50.4% | intergenic (+465/+271) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_hsa_tpiA | = 1097455 | 36 (0.320) | intergenic (+626/+110) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 1097282 | 26 (0.220) | 33 (0.300) | 20/258 | 10.0 | 52.6% | intergenic (+453/+283) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_hsa_tpiA | = 1097467 | 35 (0.310) | intergenic (+638/+98) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 1097113 | 95 (0.800) | 33 (0.300) | 20/258 | 10.0 | 37.0% | intergenic (+284/+452) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_hsa_tpiA | = 1097274 | 23 (0.210) | intergenic (+445/+291) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||