New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA = 310553149 (1.010)4 (0.090) 4/274 6.8 8.0% intergenic (+19/‑183) mltC/nupG membrane‑bound lytic murein transglycosylase C/nucleoside transporter
?NC_000913_3_pae_tpiA = 3105537 46 (1.000)intergenic (+25/‑177) mltC/nupG membrane‑bound lytic murein transglycosylase C/nucleoside transporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGCTGCCAATATTATTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_tpiA/3105380‑3105531
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccctgaGCATCGTCAGGGGCGGTTAATGGAATTATCGGCGGCGGTAGGATTTTTGCGCGGTATTCACTTTATAAAGATAACGGCGAGATTCCGCAGAGGGATGGCGGGTCGTCAGCGTCTGATAAACATCGCCCGGCGTCATGGTGTTAATAA  <  NC_000913_3_pae_tpiA/3105537‑3105391
                                                                                                                                                                                                                                                                                                           
GGCTGCCAATATTATTAACACCATGACTCCGGGCTATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCC                                                                                                                                                        <  1:311923/149‑1
   TGCCAATATTATTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGA                                                                                                                                                     <  1:388925/149‑1
                                      TTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGAGCATCGTCAGGGGCGGTTAATG                                                                                                                               >  2:621416/1‑136
                                      TTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGAGCAGCGTCAGGGGCGGTTAATG                                                                                                                               <  1:621416/136‑1
                                                                                           TATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGAGCATCGTCAGGGGCGGTTAAT                                                                                                                                >  1:276509/1‑82
                                                                                           TATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGAGCATCGTCAGGGGCGGTTAAT                                                                                                                                <  2:276509/82‑1
                                                                                                                                                   CCTGAGCATCGTCAGGGGCGGTTAATGGAATTATCGGCGGCGGTAGGATTTTTGCGCGGTATTCACTTTATAAAGATAACGGCGAGATTCCGCAGAGGGATGGCGGGTCGTCAGCGTCTGATAAACATCGCCCGGCGTCATGGTGTTAA     <  1:202222/149‑1
                                                                                                                                                   CCTGAGCATCGTCAGGGGCGGTTAATGGAATTATCGGCGGCGGTAGGATTTTTGCGCGGTATTCACTTTATAAAGATAACGGCGAGATTCCGCAGAGGGATGGCGGGTCGTCAGCGTCTGATAAACATCGCCCGGCGTCATGGTGTTAA     >  1:468997/1‑149
                                                                                                                                                      GAGCATCGTCAGGGGCGGTTAATGGAATTATCGGCGGCGGTAGGATTTTTGCGCGGTATTCACTTTATAAAGATAACGGCGAGATTCCGCAGAGGGATGGCGGGTCGTCAGCGTCTGATAAACATCGCCCGGCGTCATGGTGTTAATAA  <  1:693241/149‑1
                                                                                                                                                                                                                                                                                                           
GGCTGCCAATATTATTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_tpiA/3105380‑3105531
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccctgaGCATCGTCAGGGGCGGTTAATGGAATTATCGGCGGCGGTAGGATTTTTGCGCGGTATTCACTTTATAAAGATAACGGCGAGATTCCGCAGAGGGATGGCGGGTCGTCAGCGTCTGATAAACATCGCCCGGCGTCATGGTGTTAATAA  <  NC_000913_3_pae_tpiA/3105537‑3105391

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.