New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 3105531	49 (1.010)	4 (0.090)	4/274	6.8	8.0%	intergenic (+19/‑183)	mltC/nupG	membrane‑bound lytic murein transglycosylase C/nucleoside transporter
	?	NC_000913_3_pae_tpiA	= 3105537	46 (1.000)					intergenic (+25/‑177)	mltC/nupG	membrane‑bound lytic murein transglycosylase C/nucleoside transporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGCCAATATTATTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTGCCACAGGTAACAAAAAACCAGTCCGCGAAGTTGATAGAATCCCATCATCTCGCACGGTCAAATGTGCTTTTTCAA  >  NC_000913_3_pae_tpiA/3105383‑3105679                                                                                                                                                     |                                                                                                                                                     tGCCAATATTATTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGa                                                                                                                                                      <  1:388925/149‑1 (MQ=255)    ctgaatgattaACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACAGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGa                                                                                                                                                   <  2:637376/142‑1 (MQ=255)     aaTATTATTAACACCATGACGCCGGGCGCTGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCCCCGCCGATCATTCCATTAACGCCCCCTGACGAt                                                                                                                                                  >  2:477139/1‑149 (MQ=255)         ttattaACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTc                                                                                                                                              >  1:693241/1‑149 (MQ=255)            ttaACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAgg                                                                                                                                           >  1:202222/1‑149 (MQ=255)            ttaACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAgg                                                                                                                                           <  1:468997/149‑1 (MQ=255)                     tGACCCCGGGCGATTTTTCTCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAAt                                                                                                                                  <  1:300420/149‑1 (MQ=255)                                caTGCTTATCAGAAGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTAAAGACCGCTCAAACATCCTACCGCCGCCGATAATTCCATTAACCGCCCCGGACGATGCTCAGGGGCAAACATGTTATCcacct                                                                                                                       <  2:457135/148‑3 (MQ=255)                                      tATCAGACGCTGACGACCCGCCATCCTTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATCCCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACAGCCCCTGACGATGCTCATTGGCAAAAATGTTTTGCACATccaaat                                                                                                                 >  2:16416/1‑144 (MQ=255)                                        tCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCATAAATCCTACCGCCGCCGATAATTCCATTAACCGCACCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAAttt                                                                                                               >  1:644490/1‑149 (MQ=255)                                          aGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCg                                                                                                             >  2:236574/1‑149 (MQ=255)                                           gACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATCCCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCTCCCCTGACGATGCTCAGCGCCAAAAATGTTATCAACATCACAATTTcct                                                                                                            >  2:196923/1‑147 (MQ=255)                                             cGCTGACGAACCGCCATCCCCTTGCGTAATCTCGCCGTTATCTTTATAAAGCGAATACCTCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGTCGATGCTCAGGCGTAAAAAGGTTATCCACATCACAATTTCGttt                                                                                                          <  2:337870/149‑1 (MQ=255)                                              gCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGtttt                                                                                                         <  1:592588/149‑1 (MQ=255)                                                tGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGc                                                                                                       >  1:269449/1‑149 (MQ=255)                                                    gacCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAAt                                                                                                   >  1:816334/1‑149 (MQ=255)                                                      cccGCCATCCCTCGGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCGGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTg                                                                                                 <  1:545941/149‑1 (MQ=255)                                                       cccccATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTgg                                                                                                <  2:676433/146‑1 (MQ=255)                                                             tCCGTCTGCTGAATCTCGCAGTTATCTTTATAAAGTGAATACCGCCAAAAAATCCTACCGCCGCCGATAATTCCATTACCCGCCTCTGACTATTCTCTGGGGCAAAAATGTTATCCTCATCACAATTTCGTTTTGCAAATTGGGAATGt                                                                                          <  2:266293/149‑1 (MQ=255)                                                                 tctGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCCCAATTTCGTTTTGCACATTGGGAATGTTTGc                                                                                      >  2:521851/1‑149 (MQ=255)                                                                 tctGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGc                                                                                      <  1:236574/149‑1 (MQ=255)                                                                 tctGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGACGATAATTCCATTAACCGCCCCTGACGATGCTCAGGAGGAAAAATGTTATCCACATCCCAACTTCGGTTTGAAAATGGGCAATGTTTGc                                                                                      >  2:817018/1‑149 (MQ=255)                                                                          tctcGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTg                                                                             >  1:285717/1‑149 (MQ=255)                                                                           ctcGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTGc                                                                            <  1:401450/149‑1 (MQ=255)                                                                           ctcGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTGc                                                                            <  1:617364/149‑1 (MQ=255)                                                                            tcGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTGcc                                                                           <  1:134653/149‑1 (MQ=255)                                                                              gCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTGCcac                                                                         >  1:225583/1‑149 (MQ=255)                                                                                          ataAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTGCCACAGGTAACaaaaa                                                             >  2:103537/1‑149 (MQ=255)                                                                                             aaGTGAGTAATGCGCAAAAATCCTACCGGCGCCGATAATTCCATGAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAAATTCGTTTTGCAAATTGGTAATGTTTGCAATTATGTGCGACAGGTAACAATAAAca                                                          >  2:492442/1‑148 (MQ=255)                                                                                             aaGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAACTTGGGAATGTTTGCAATTATTTGCCACAGGTAACAAAAAAcc                                                          >  2:471504/1‑149 (MQ=255)                                                                                              aGTGAATATCGATCAAAGATCCTACCGCCGCCTATAATTCCATTAAACGCCCCTCACGATGCTCAGGGGCAAAAACGTTATCCACATCACAATTTCTTTTTGCAAACTGGGAATGTTTGCAACTATTTGCCACAGGTAACAAAAAACCa                                                         <  2:623802/149‑1 (MQ=255)                                                                                              aGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAGGATGTTATCCACATCACAATTTAGTTTTGCAAATTGGGAATGTTTGCAGTTATTTGTCACAGGTTACGAACAACCa                                                         >  1:543501/1‑149 (MQ=255)                                                                                              aGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTGCCACAGGTAACAAAAAACCa                                                         <  1:736614/149‑1 (MQ=255)                                                                                                  aaTACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTCCAACAGGTAACAAAAAACCAGTcc                                                     >  2:733092/1‑149 (MQ=255)                                                                                                              aaaTCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTGCCACAGGTAACAAAAAACCAGTCCGCGAAGTTGATa                                         <  1:103537/149‑1 (MQ=255)                                                                                                                 tCCTACCGCCGCCGATAATTCCATTAACCGCCCCGGACGATGCTCAGGGGGAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGTGAATGTTTGCAATTATTTGCCACAGGTAACAAAAAACCAGTCCGCGAAGTTGATAGaa                                      <  1:34377/149‑1 (MQ=255)                                                                                                                    tACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTGCCACAGGTAACAAAAAACCAGTCCGCGAAGTTGATAGAATcc                                   >  1:764639/1‑149 (MQ=255)                                                                                                                    tACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGCCAAAAATGTTATCCACATCTGAATTTCGTTTTGCAAAGTGGGAATGTTTGCAATTATTTGCCACAGGTAACAAAAACCCAGTACTCGAAGTTGATAGAATcc                                   >  1:768055/1‑149 (MQ=255)                                                                                                                        gccgcccATAATTCCATTAACCGCCCCTGTCGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTGCCACAGGTAACAAAAAACCAGTCCGCGAAGTTGATAGAATCCcatc                               <  1:65213/149‑1 (MQ=255)                                                                                                                                gaagcgcATTAATCGCGCCTGACGATACAACGGGGCAAACATGTTATCCATATCACAATGTCGTTTTGCAAAGGGGGAATGATTACAATTATTTTCCACAGGTAACAAAAAACCAGTCCGCGAAGTTGATAGAATCCCAGCATCTCGCa                       <  2:323463/143‑1 (MQ=255)                                                                                                                                    tCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTGCCACAGGTAACAAAAAACCAGTCCGCGAAGTTGATAGAATCCCATCATCTCGCACGGt                   <  1:397248/149‑1 (MQ=255)                                                                                                                                      cATTAACCGCCCCTGACGATGCTCACGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTGCCACAGGTAACAAAAAACCAGTCCGCGAAGTTGATAGAATCCCATCATCTCGCTCGGTCa                 >  1:771793/1‑149 (MQ=255)                                                                                                                                            ccGCCCCTTACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTGCCACAGGTAACAAAAAACCAGCCCGCGAAGTTGATAGAATCCCATCATCTCGCACGGTCAAAtgtg           <  1:741611/149‑1 (MQ=255)                                                                                                                                            ccGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTGCCACAGGTAAAACAAAAGCAGGACGCGAATTTGATAGAATCCCATCATCTCGCTCGGTCAAAtgtg           >  1:237491/1‑149 (MQ=255)                                                                                                                                               acccAGACCATGCCCAGGAACAAAAATGCTAGCCACAACACAATTACGTTTGGCAAATTGGGAATGTTTGCAATTATTTGCCACAGGTAACAAAAAACCAGTCCGCGAAGTTGATAGAATCCCATCATCTCGCACGGTCAAATGTGCtt        <  1:229883/148‑1 (MQ=255)                                                                                                                                                 ccTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTGCCACAGGTAACAAAAAACCAGTCCGCGAAGTTGATAGAATCCCATCATCTCGCACGGTCAAATGTGCtttt      >  1:738476/1‑149 (MQ=255)                                                                                                                                                  ccgACGATGTTTAGGGGCAAAGATGTTATCCACAGCACATTTAGGTTTTGCAAATTGGGAATGTTTGCAATTAGGTGCCACAGGTAACAAAAATCCTGTCCGCGAAGTTGATAGATTCCCATCATCTCGCACGGTCAAATGTGCttgtt     <  2:355895/147‑1 (MQ=255)                                                                                                                                                   tGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTGCCACAGGTAACAAAAAACCAGTCCGCGAAGTTGATAGAATCCCATCATCTCGCACGGTCAAATGTGCTTTTTc    <  1:174753/149‑1 (MQ=255)                                                                                                                                                   tGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTGCCACAGGTAACAAAAAACCAGTCCGCGAAGTTGATAGAATCCCATCATCTCGCACGGTCAAATGTGCTTTTTc    >  2:6967/1‑149 (MQ=255)                                                                                                                                                     aCGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTGCCACAGGTAACAAAAAACCAGTCCGCGAAGTTGATAGAATCCCATCATCTCGCACGGTCAAATGTGCTTTTTCaa  >  2:233756/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     TGCCAATATTATTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTGCCACAGGTAACAAAAAACCAGTCCGCGAAGTTGATAGAATCCCATCATCTCGCACGGTCAAATGTGCTTTTTCAA  >  NC_000913_3_pae_tpiA/3105383‑3105679

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.