New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 3916335	16 (1.030)	4 (0.270)	4/232	1.4	21.1%	coding (1041/1383 nt)	atpD	F1 sector of membrane‑bound ATP synthase, beta subunit
	?	NC_000913_3_pae_tpiA	= 3916349	15 (1.030)					coding (1027/1383 nt)	atpD	F1 sector of membrane‑bound ATP synthase, beta subunit

TGGATCTTACGAGCACGCGCTACCACCAGTTTGTCTTCTTCAGACAGTTCATCCATACCCAGGATGGCGATGATGTCTTTCAGTTCCTGATAACGTTGCAGGATGGACTGAACGCCACGCGCGGTGTCGTAGTGTTCCTGACCAACCACCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_tpiA/3916183‑3916335 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaccagcCGTCAGCTGGACCCGCTGGTGGTTGGTCAGGA  <  NC_000913_3_pae_tpiA/3916349‑3916318                                                                                                                                                                                           TGGATCTTACGAGCACGCGCTACCACCAGTTTGTCTTCTTCAGACAGTTCATCCATACCCAGGATGGCGATGATGTCTTTCAGTTCCTGATAACGTTGCAGGATGGACTGAACGCCACGCGCGGTGTCGTAGTGTTCCTGACCAAC                                         >  1:74989/1‑146 TGGATCTTACGAGCACGCGCTACCACCAGTTTGTCTTCTTCAGACAGTTCATCCATACCCAGGATGGCGATGATGTCTTTCAGTTCCTGATAACGTTGCAGGATGGACTGAACGCCACGCGCGGTGTCGTAGTGTTCCTGACCAAC                                         <  2:74989/146‑1                                TGTCTTCTTCAGACAGTTCATCCATACCCAGGATGGCGATGATGTCTTTCAGTTCCTGATAACGTTGCAGGATGGACTGAACGCCACGCGCGGTGTCGTAGTGTTCCTGACCAACCACCAG                                   <  3:40721/121‑1                                TGTCTTCTTCAGACAGTTCATCCATACCCAGGATGGCGATGATGTCTTTCAGTTCCTGATAACGTTGCAGGATGGACTGAACGCCACGCGCGGTGTCGTAGTGTTCCTGACCAACCACCAG                                   >  4:40721/1‑121                                                           CCAGGATGGCGATGATGTCTTTCAGTTCCTGATAACGTTGCAGGATGGACTGAACGCCACGCGCGGTGTCGTAGTGTTCCTGACCAACCACCAGCCGTCAGCTGGACCCGCTGGTGGTTGGTCA     <  1:20855/124‑1                                                           CCAGGATGGCGATGATGTCTTTCAGTTCCTGATAACGTTGCAGGATGGACTGAACGCCACGCGCGGTGTCGTAGTGTTCCTGACCAACCACCAGCCGTCAGCTGGACCCGCTGGTGGTTGGTCA     >  2:20855/1‑124                                                                                         GATAACGTTGCAGGATGGACTGAACGCCACGCGCGGTGTCGTAGTGTTCCTGACCAACCACCAGCCGTCAGCTGGACCCGCTGGTGGTTGGTCAGGA  <  3:101867/97‑1                                                                                         GATAACGTTGCAGGATGGACTGAACGCCACGCGCGGTGTCGTAGTGTTCCTGACCAACCACCAGCCGTCAGCTGGACCCGCTGGTGGTTGGTCAGGA  >  4:101867/1‑97                                                                                                                                                                                           TGGATCTTACGAGCACGCGCTACCACCAGTTTGTCTTCTTCAGACAGTTCATCCATACCCAGGATGGCGATGATGTCTTTCAGTTCCTGATAACGTTGCAGGATGGACTGAACGCCACGCGCGGTGTCGTAGTGTTCCTGACCAACCACCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_tpiA/3916183‑3916335 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaccagcCGTCAGCTGGACCCGCTGGTGGTTGGTCAGGA  <  NC_000913_3_pae_tpiA/3916349‑3916318

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.