New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 3916335	16 (1.030)	4 (0.270)	4/232	1.4	21.1%	coding (1041/1383 nt)	atpD	F1 sector of membrane‑bound ATP synthase, beta subunit
	?	NC_000913_3_pae_tpiA	= 3916349	15 (1.030)					coding (1027/1383 nt)	atpD	F1 sector of membrane‑bound ATP synthase, beta subunit

CTTACGAGCACGCGCTACCACCAGTTTGTCTTCTTCAGACAGTTCATCCATACCCAGGATGGCGATGATGTCTTTCAGTTCCTGATAACGTTGCAGGATGGACTGAACGCCACGCGCGGTGTCGTAGTGTTCCTGACCAACCACCAGCGGGTCCAGCTGACGGCTGGTGGAGTCCAGCGGGTCAACGGCCGGGTAGATACCCAGAGACGCGATCTGACGGCTCAGTACCACGGTTGCGTCAAGGTGCGCAAAGGTGGTTGCCGGAGACGGGTCAGTCAAGT  >  NC_000913_3_pae_tpiA/3916188‑3916468                                                                                                                                                    |                                                                                                                                      cTTACGAGCACGCGCTACCACCAGTTTGTCTTCTTCAGACAGTTCATCCATACCCAGGATGGCGATGATGTCTTTCAGTTCCTGATAACGTTGCAGGATGGACTGAACGCCACGCGCGGTGTCGTAGTGTTCCTGACCAACCACCAGCgg                                                                                                                                     >  4:50233/1‑150 (MQ=255)         cACGCGCTACCACCAGTTTGTCTTCTTCAGACAGTTCATCCATACCCAGGATGGCGATGATGTCTTTCAGTTCCTGATAACGTTGCAGGATGGACTGAACGCCACGCGCGGTGTCGTAGTGTTCCTGACCAACCACCAGCGGGTCCAGCt                                                                                                                             <  3:50233/150‑1 (MQ=255)                                   tcAGACAGTTCATCCATACCCAGGATGGCGATGATGTCTTTCAGTTCCTGATAACGTTGCAGGATGGACTGAACGCCACGCGCGGTGTCGTAGTGTTCCTGACCAACCACCAGCGGGTCCAGCTGACGGCTGGTGGAGTCCAGCGGGTCa                                                                                                   >  1:182043/1‑150 (MQ=255)                                                ccATACCCAGGATGGCGATGATGTCTTTCAGTTCCTGATAACGTTGCAGGATGGACTGAACGCCACGCGCGGTGTCGTAGTGTTCCTGACCAACCACCAGCGGGTCCAGCTGACGGCTGGTGGAGTCCAGCGGGTCAACGGCCGGGTAGa                                                                                      <  2:182043/150‑1 (MQ=255)                                                      ccAGGATGGCGATGATGTCTTTCAGTTCCTGATAACGTTGCAGGATGGACTGAACGCCACGCGCGGTGTCGTAGTGTTCCTGACCAACCACCAGCcgtcagctggacccgctggtggttggtca                                                                                                          <  1:20855‑M1/124‑30 (MQ=255)                                                      ccAGGATGGCGATGATGTCTTTCAGTTCCTGATAACGTTGCAGGATGGACTGAACGCCACGCGCGGTGTCGTAGTGTTCCTGACCAACCACCAGCcgtcagctggacccgctggtggttggtca                                                                                                          >  2:20855‑M1/1‑95 (MQ=255)                                                                         tttCAGTTCCTGATAACGTTGCAGGATGGACTGAACGCCACGCGCGGTGTCGTAGTGTTCCTGACCAACCACCAGCGGGTCCAGCTGACGGCTGGTGGAGTCCAGCGGGTCAACGGCCGGGTAGATACCCAGAGACGCGATCTGACGGCt                                                             >  2:44822/1‑150 (MQ=255)                                                                               ttCCTGATAACGTTGCAGGATGGACTGAACGCCACGCGCGGTGTCGTAGTGTTCCTGACCAACCACCAGCGGGTCCAGCTGACGGCTGGTGGAGTCCAGCGGGTCAACGGCCGGGTAGATACCCAGAGACGCGATCTGACGGCTCAGTAc                                                       >  3:95543/1‑150 (MQ=255)                                                                                   tGATAACGTTGCAGGATGGACTGAACGCCACGCGCGGTGTCGTAGTGTTCCTGACCAACCACCAGCGGGTCCAGCTGACGGCTGGTGGAGTCCAGCGGGTCAACGGCCGGGTAGATACCCAGAGACGCGATCTGACGGCTCAGTACCACg                                                   >  2:3229/1‑150 (MQ=255)                                                                                    gATAACGTTGCAGGATGGACTGAACGCCACGCGCGGTGTCGTAGTGTTCCTGACCAACCACCAGCcgtcagctggacccgctggtggttggtcagga                                                                                                       >  4:101867‑M1/1‑65 (MQ=255)                                                                                    gATAACGTTGCAGGATGGACTGAACGCCACGCGCGGTGTCGTAGTGTTCCTGACCAACCACCAGCcgtcagctggacccgctggtggttggtcagga                                                                                                       <  3:101867‑M1/97‑33 (MQ=255)                                                                                          gTTGCAGGATGGACTGAACGCCACGCGCGGTGTCGTAGTGTTCCTGACCAACCACCAGCGGGTCCAGCTGACGGCTGGTGGAGTCCAGCGGGTCAACGGCCGGGTAGATACCCAGAGACGCGATCTGACGGCTCAGTACCACGGTTGCGt                                            >  4:57888/1‑150 (MQ=255)                                                                                                       cTGAACGCCACGCGCGGTGTCGTAGTGTTCCTGACCAACCACCAGCGGGTCCAGCTGACGGCTGGTGGAGTCCAGCggg                                                                                                      <  4:7660/79‑1 (MQ=255)                                                                                                       cTGAACGCCACGCGCGGTGTCGTAGTGTTCCTGACCAACCACCAGCGGGTCCAGCTGACGGCTGGTGGAGTCCAGCggg                                                                                                      >  3:7660/1‑79 (MQ=255)                                                                                                                    gcgGTGTCGTAGTGTTCCTGACCAACCACCAGCGGGTCCAGCTGACGGCTGGTGGAGTCCAGCGGGTCAACGGCCGGGTAGATACCCAGAGACGCGATCTGACGGCTCAGTACCACGGTTGCGTCAAGGTGCGCAAAGGTGGTTGCCGga                  <  3:57888/150‑1 (MQ=255)                                                                                                                                  ttCCTGACCAACCACCAGCGGGTCCAGCTGACGGCTGGTGGAGTCCAGCGGGTCAACGGCCGGGTAGATACCCAGAGACGCGATCTGACGGCTCAGTACCACGGTTGCGTCAAGGTGCGCAAAGGTGGTTGCCGGAGACGGGTCagtcaa    <  1:44822/150‑1 (MQ=255)                                                                                                                                   tCCTGACCAACCACCAGCGGGTCCAGCTGACGgctggtggttggtcaggaacactacgacaccgcgcgtggcgttcagtccatcctgcaacgttatc                                                        <  3:101867‑M2/97‑66 (MQ=255)                                                                                                                                   tCCTGACCAACCACCAGCGGGTCCAGCTGACGgctggtggttggtcaggaacactacgacaccgcgcgtggcgttcagtccatcctgcaacgttatc                                                        >  4:101867‑M2/1‑32 (MQ=255)                                                                                                                                   tCCTGACCAACCACCAGCGGGTCCAGCTGACGGCTGGTGGAGTCCAGCGGGTCAACGGCCGGGTAGATACCCAGAGACGCGATCTGACGGCTCAGTACCACGGTTGCGTCAAGGTGCGCAAAGGTGGTTGCCGGAGACGGGTCagtcaag   <  1:3229/150‑1 (MQ=255)                                                                                                                                    ccTGACCAACCACCAGCGGGTCCAGCTGACGGCTGGTGGAGTCCAGCGGGTCAACGGCCGGGTAGATACCCAGAGACGCGATCTGACGGCTCAGTACCACGGTTGCGTCAAGGTGCGCAAAGGTGGTTGCCGGAGACGGGTCagtcaagt  >  2:26195/1‑150 (MQ=255)                                                                                                                                      tGACCAACCACCAGCGGGTCCAGCTGACGgctggtggttggtcaggaacactacgacaccgcgcgtggcgttcagtccatcctgcaacgttatcaggaactgaaagacatcatcgccatcctgg                          >  2:20855‑M2/1‑29 (MQ=255)                                                                                                                                      tGACCAACCACCAGCGGGTCCAGCTGACGgctggtggttggtcaggaacactacgacaccgcgcgtggcgttcagtccatcctgcaacgttatcaggaactgaaagacatcatcgccatcctgg                          <  1:20855‑M2/124‑96 (MQ=255)                                                                                                                                                ccaGCGGGTCCAGCTGACGGCTGGTGGAGTCCAGCGGGTCAACGGCCGGGTAGATACCCAGAGACGCGATCTGACGGCTCAGTACCACGGTTGCGTCAAGGTGCGCAAAGGTGGTTGCCGGAGACgg             >  2:84765/1‑127 (MQ=255)                                                                                                                                                ccaGCGGGTCCAGCTGACGGCTGGTGGAGTCCAGCGGGTCAACGGCCGGGTAGATACCCAGAGACGCGATCTGACGGCTCAGTACCACGGTTGCGTCAAGGTGCGCAAAGGTGGTTGCCGGAGACgg             <  1:84765/127‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                      CTTACGAGCACGCGCTACCACCAGTTTGTCTTCTTCAGACAGTTCATCCATACCCAGGATGGCGATGATGTCTTTCAGTTCCTGATAACGTTGCAGGATGGACTGAACGCCACGCGCGGTGTCGTAGTGTTCCTGACCAACCACCAGCGGGTCCAGCTGACGGCTGGTGGAGTCCAGCGGGTCAACGGCCGGGTAGATACCCAGAGACGCGATCTGACGGCTCAGTACCACGGTTGCGTCAAGGTGCGCAAAGGTGGTTGCCGGAGACGGGTCAGTCAAGT  >  NC_000913_3_pae_tpiA/3916188‑3916468

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.