New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	624579 =	9 (0.580)	4 (0.270)	4/238	1.5	30.0%	intergenic (‑69/‑306)	fepB/entC	ferrienterobactin ABC transporter periplasmic binding protein/isochorismate synthase 1
	?	NC_000913_3_pae_tpiA	624602 =	10 (0.670)					intergenic (‑92/‑283)	fepB/entC	ferrienterobactin ABC transporter periplasmic binding protein/isochorismate synthase 1

TTCCAGGGTGAGGGCTGGGGTGAGGGTTAATGTTCGCACCAGTGCTGGCTGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_pae_tpiA/624667‑624579 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagggTTAGGGTGAGGGGAACAGCCAGCACTGGTGCGAACATTAA  >  NC_000913_3_pae_tpiA/624602‑624641                                                                                                                                   TTCCAGGGTGAGGGCTGGGGTGAGGGTTAATGTTCGCACCAGTGCTGGCTGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGTTAGGGTGAGGGGAACAGCCAGCACTGGTGC           >  1:73341/1‑120 TTCCAGGGTGAGGGCTGGGGTGAGGGTTAATGTTCGCACCAGTGCTGGCTGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGTTAGGGTGAGGGGAACAGCCAGCACTGGTGC           <  2:73341/120‑1                                                                   CCCTCTCCCCAAAGGGGCGAGGGTTAGGGTGAGGGGAACAGCCAGCACTGGTGCGAACATTAA  <  3:13813/63‑1                                                                   CCCTCTCCCCAAAGGGGCGAGGGTTAGGGTGAGGGGAACAGCCAGCACTGGTGCGAACATTAA  >  4:13813/1‑63                                                                                                                                   TTCCAGGGTGAGGGCTGGGGTGAGGGTTAATGTTCGCACCAGTGCTGGCTGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_pae_tpiA/624667‑624579 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagggTTAGGGTGAGGGGAACAGCCAGCACTGGTGCGAACATTAA  >  NC_000913_3_pae_tpiA/624602‑624641

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.