New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	624579 =	9 (0.580)	4 (0.270)	4/238	1.5	30.0%	intergenic (‑69/‑306)	fepB/entC	ferrienterobactin ABC transporter periplasmic binding protein/isochorismate synthase 1
	?	NC_000913_3_pae_tpiA	624602 =	10 (0.670)					intergenic (‑92/‑283)	fepB/entC	ferrienterobactin ABC transporter periplasmic binding protein/isochorismate synthase 1

ATCAGCTTCCTGTTATTAATAAGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGAACAGCCAGCACTGGTGCGAACATTAACCCTCACCCCAGCCCTCACCCTGGAAGGGAGAGGGGGCAGAACGGCGCAGGACATCACATTGCGCTTATGCGAATCCATCAATAATGCTTCTCATTT  >  NC_000913_3_pae_tpiA/624513‑624738                                                                                          |                                                                                                                                         ttccagggtgagggctggggtgagggttaatgttcgcaccagtgctggctgttcccctcaccctaaccctctccccaaaggggcgagggTTAGGGTGAGGGGAACAGCCAGCACTGGTGc                                                                                                            >  1:73341‑M2/90‑120 (MQ=255) ttccagggtgagggctggggtgagggttaatgttcgcaccagtgctggctgttcccctcaccctaaccctctccccaaaggggcgagggTTAGGGTGAGGGGAACAGCCAGCACTGGTGc                                                                                                            <  2:73341‑M2/31‑1 (MQ=255)          cTGTTATTAATAAGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTa                                                                                                                                        >  1:163521/1‑83 (MQ=255)          cTGTTATTAATAAGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTa                                                                                                                                        <  2:163521/83‑1 (MQ=255)               attaATAAGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGAACAGCCAGCACTGGTGCGAACATTAACCCTCACCCCAGCCCTCACCCTGGAAGGGAGAggg                                                                >  1:102684/1‑150 (MQ=255)                                    gcaccagtgctggctgttcccctcaccctaaCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGAACAGCCAGCACTGGTGCGAACATTAACCCTCACCCCAGCCCTCACCCTGGaa                                                                         >  1:73341‑M1/32‑120 (MQ=255)                                    gcaccagtgctggctgttcccctcaccctaaCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGAACAGCCAGCACTGGTGCGAACATTAACCCTCACCCCAGCCCTCACCCTGGaa                                                                         <  2:73341‑M1/89‑1 (MQ=255)                                       aCAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGAACAGCCAGCACTGGTGCGAACATTAACCCTCACCCCAGCCCTCACCCTGGAAGGGAGAGGGGGCAGAACGGCGCAGGACATca                                          >  3:80422/1‑148 (MQ=255)                                       aCAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGAACAGCCAGCACTGGTGCGAACATTAACCCTCACCCCAGCCCTCACCCTGGAAGGGAGAGGGGGCAGAACGGCGCAGGACATca                                          <  4:80422/148‑1 (MQ=255)                                                    aGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGAACAGCCAGCACTGGTGCGAACATTAACCCTCACCCCAGCCCTCACCCTGGAAGGGAGAGGGGGCAGAACGGCGCAGGACATCACATTGCGCTTATGCg                           >  2:161238/1‑150 (MQ=255)                                                     gcgcACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGAACAGCCAGCACTGGTGCGAACATTAACCCTCACCCCAGCCCTCACCCTGGAAGGGAGAGGGGGCAGAACGGCGCAGGACATCACATTGCGCTTATGCGa                          >  1:123195/1‑150 (MQ=255)                                                                   ccctctccccaaaggggcgagggTTAGGGTGAGGGGAACAGCCAGCACTGGTGCGAACATTaa                                                                                                   <  3:13813‑M2/40‑1 (MQ=255)                                                                   ccctctccccaaaggggcgagggTTAGGGTGAGGGGAACAGCCAGCACTGGTGCGAACATTaa                                                                                                   >  4:13813‑M2/24‑63 (MQ=255)                                                                             tttGGGGAGAGGGTTAGGGTGAGGGGAACAGCCAGCACTGGTGCGAACATTAACCCTCACCCCAGCCCTCACCCTGGAAGGGAGAGGGGGCAGAACGGCGCAGGACATCACATTGCGCTTATGc                            <  3:114428/124‑1 (MQ=255)                                                                             tttGGGGAGAGGGTTAGGGTGAGGGGAACAGCCAGCACTGGTGCGAACATTAACCCTCACCCCAGCCCTCACCCTGGAAGGGAGAGGGGGCAGAACGGCGCAGGACATCACATTGCGCTTATGc                            >  4:114428/1‑124 (MQ=255)                                                                             tttGGGGAGAGGGTTAGGGTGAGGGGAACAGCCAGCACTGGTGCGAACATTAACCCTCACCCCAGCCCTCACCCTGGAAGGGAGAGGGGGCAGAACGGCGCAGGACATCACATTGCGCTTATGCGAATCCATCAATAATGCTTCTCAttt  >  1:83547/1‑150 (MQ=255)                                                                                          |                                                                                                                                         ATCAGCTTCCTGTTATTAATAAGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGAACAGCCAGCACTGGTGCGAACATTAACCCTCACCCCAGCCCTCACCCTGGAAGGGAGAGGGGGCAGAACGGCGCAGGACATCACATTGCGCTTATGCGAATCCATCAATAATGCTTCTCATTT  >  NC_000913_3_pae_tpiA/624513‑624738

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.