New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 4454506	12 (0.770)	3 (0.210)	3/230	1.7	20.6%	intergenic (+12/+21)	yjfF/fbp	putative sugar ABC transporter permease/fructose‑1,6‑bisphosphatase I
	?	NC_000913_3_pae_tpiA	= 4454510	12 (0.830)					intergenic (+16/+17)	yjfF/fbp	putative sugar ABC transporter permease/fructose‑1,6‑bisphosphatase I

TATTTTGTTGTTTATTTTTATAGCATTACAGCGTGGATTAACGGTGCTGTGGGAGAATCGTCAGAGTTCGCCAGTGACAAGAGTCAACATTGCGCAGCAATAAAAACGCCTCTCCGTGTGGAGAGGCGCAGGAGATTACGCGTCCGGGAACTCACGGATAAAGCGTTCGACATCTTCAACCATATGGTCGTTGCCGACAAAGAATGAACGGCGCTGGTGCAGGGTTTCCGGGATGATATCCAGAATACGCTCTTT  >  NC_000913_3_pae_tpiA/4454392‑4454646                                                                                                                   |                                                                                                                                             tATTTTGTTGTTTATTTTTATAGCATTACAGCGTGGATTAACGGTGCTGTGGGAGAATCGTCAGAGTTCGCCAGTGACAAGAGTCAACATTGCGCAGCAATAAAAACGCCTCTCCacacggagaggcgtttttattgctgcgcaatgttg                                                                                                           <  1:164886‑M1/150‑36 (MQ=255)                         aTTACAGCGTGGATTAACGGTGCTGTGGGAGAATCGTCAGAGTTCGCCAGTGACAAGAGTCAACATTGCGCAGCAATAAAAACGCCTCTCCGTGTGGAGAGGCGCAGGAGATTACGCGTCCGGGAACTCACGGATAAAGCGTTCGACATc                                                                                   <  2:15473/150‑1 (MQ=255)                             cAGCGTGGATTAACGGTGCTGTGGGAGAATCGTCAGAGTTCGCCAGTGACAAGAGTCAACATTGCGCAGCAATAAAAACGCCTCTCCGTGTGGAGAGGCGCAGGAGATTACGCGTCCGGGAACTCACGGATAAAGCGTTCGACATCTTCa                                                                               <  1:35043/150‑1 (MQ=255)                                          cGGTGCTGTGGGAGAATCGTCAGAGTTCGCCAGTGACAAGAGTCAACATTGCGCAGCAATAAAAACGCCTCTCCGTGTGGAGAGGCGCAGGAGATTAcgc                                                                                                                    >  2:88444/1‑100 (MQ=255)                                          cGGTGCTGTGGGAGAATCGTCAGAGTTCGCCAGTGACAAGAGTCAACATTGCGCAGCAATAAAAACGCCTCTCCGTGTGGAGAGGCGCAGGAGATTAcgc                                                                                                                    <  1:88444/100‑1 (MQ=255)                                                   gggAGAATCGTCAGAGTTCGCCAGTGACAAGAGTCAACATTGCGCAGCAATAAAAACGCCTCTCCacacggagaggcgtttttattgctgcgcaatgttgactcttgtcactgg                                                                                             >  1:85569‑M1/1‑65 (MQ=255)                                                   gggAGAATCGTCAGAGTTCGCCAGTGACAAGAGTCAACATTGCGCAGCAATAAAAACGCCTCTCCacacggagaggcgtttttattgctgcgcaatgttgactcttgtcactgg                                                                                             <  2:85569‑M1/114‑50 (MQ=255)                                                    ggAGAATCGTCAGAGTTCGCCAGTGACAAGAGTCAACATTGCGCAGCAATAAAAACGCCTCTCCGTGTGGAGAGGCGCAGGAGATTACGCGTCCGGGAACTCACGGATAAAGCGTTCGACATCTTCAACCATATGGTCGTTGCCGACaaa                                                        >  3:99899/1‑150 (MQ=255)                                                        aaTCGTCAGAGTTCGCCAGTGACAAGAGTCAACATTGCGCAGCAATAAAAACGCCTCTCCGTGTGGAGAGGCGCAGGAGATTACGCGTCCGGGAACTCACGGATAAAGCGTTCGACATCTTCAACCATATGGTCGTTGCCGACAAAGAAt                                                    <  4:99899/150‑1 (MQ=255)                                                                 agTTCGCCAGTGACAAGAGTCAACATTGCGCAGCAATAAAAACGCCTCTCCGTGTGGAGAGGCGCAGGAGATTACGCGTCCGGGAACTCACGGATAAAGCGTTCGACATCTTCAACCATATGGTCGTTGc                                                               >  2:88321/1‑130 (MQ=255)                                                                 agTTCGCCAGTGACAAGAGTCAACATTGCGCAGCAATAAAAACGCCTCTCCGTGTGGAGAGGCGCAGGAGATTACGCGTCCGGGAACTCACGGATAAAGCGTTCGACATCTTCAACCATATGGTCGTTGc                                                               <  1:88321/130‑1 (MQ=255)                                                                       ccAGTGACAAGAGTCAACATTGCGCAGCAATAAAAACGCCTCTCCGTGTggagaggcgtttttattgctgcgcaatgttgactcttgtcactggcgaactctgacgattctccc                                                                         <  2:85569‑M2/114‑66 (MQ=255)                                                                       ccAGTGACAAGAGTCAACATTGCGCAGCAATAAAAACGCCTCTCCGTGTggagaggcgtttttattgctgcgcaatgttgactcttgtcactggcgaactctgacgattctccc                                                                         >  1:85569‑M2/1‑49 (MQ=255)                                                                                     cAACATTGCGCAGCAATAAAAACGCCTCTCCGTGTggagaggcgtttttattgctgcgcaatgttgactcttgtcactggcgaactctgacgattctcccacagcaccgttaatccacgctgtaatgctataaaaataaacaacaaaata                       <  1:164886‑M2/150‑116 (MQ=255)                                                                                              gcagcaATAAAAACGCCTCTCCGTGTGGAGAGGCGCAGGAGATTACGCGTCCGGGAACTCACGGATAAAGCGTTCGACATCTTCa                                                                               <  3:6341/85‑1 (MQ=255)                                                                                              gcagcaATAAAAACGCCTCTCCGTGTGGAGAGGCGCAGGAGATTACGCGTCCGGGAACTCACGGATAAAGCGTTCGACATCTTCa                                                                               >  4:6341/1‑85 (MQ=255)                                                                                                          gcGCCTCTCCACACGGAGAGGCGTAGGAGATTACGCGTCCGGGAACTCACGGATAAAGCGTTCGACATCTTCAACCATATGGTCGTTGCCGa                                                            <  2:140828/91‑1 (MQ=38)                                                                                                          aCGCCTCTCCGTGTGGAGAGGCGCAGGAGATTACGCGTCCGGGAACTCACGGATAAAGCGTTCGACATCTTCAACCATATGGTCGTTGCCGACAAAGAATGAACGGCGCTGGTGCAGGGTTTCCGGGATGATATCCAGAATACGCTCttt  >  2:134615/1‑150 (MQ=255)                                                                                                                   |                                                                                                                                             TATTTTGTTGTTTATTTTTATAGCATTACAGCGTGGATTAACGGTGCTGTGGGAGAATCGTCAGAGTTCGCCAGTGACAAGAGTCAACATTGCGCAGCAATAAAAACGCCTCTCCGTGTGGAGAGGCGCAGGAGATTACGCGTCCGGGAACTCACGGATAAAGCGTTCGACATCTTCAACCATATGGTCGTTGCCGACAAAGAATGAACGGCGCTGGTGCAGGGTTTCCGGGATGATATCCAGAATACGCTCTTT  >  NC_000913_3_pae_tpiA/4454392‑4454646

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.