New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913_3_pae_tpiA | = 4454506 | 12 (0.770) | 3 (0.210) | 3/230 | 1.7 | 20.6% | intergenic (+12/+21) | yjfF/fbp | putative sugar ABC transporter permease/fructose‑1,6‑bisphosphatase I |
? | NC_000913_3_pae_tpiA | = 4454510 | 12 (0.830) | intergenic (+16/+17) | yjfF/fbp | putative sugar ABC transporter permease/fructose‑1,6‑bisphosphatase I |
ATTACAGCGTGGATTAACGGTGCTGTGGGAGAATCGTCAGAGTTCGCCAGTGACAAGAGTCAACATTGCGCAGCAATAAAAACGCCTCTCCGTGTGGAGAGGCGCAGGAGATTACGCGTCCGGGAACTCACGGATAAAGCGTTCGACATCTTCAACCATATGGTCGTTGCCGACAAAGAATGAACGGCGCTGGTGCAGGGTTTCCGGGATGATATCCAGAATACGCTCTTT > NC_000913_3_pae_tpiA/4454416‑4454646 | aTTACAGCGTGGATTAACGGTGCTGTGGGAGAATCGTCAGAGTTCGCCAGTGACAAGAGTCAACATTGCGCAGCAATAAAAACGCCTCTCCGTGTGGAGAGGCGCAGGAGATTACGCGTCCGGGAACTCACGGATAAAGCGTTCGACATc < 2:15473/150‑1 (MQ=255) cAGCGTGGATTAACGGTGCTGTGGGAGAATCGTCAGAGTTCGCCAGTGACAAGAGTCAACATTGCGCAGCAATAAAAACGCCTCTCCGTGTGGAGAGGCGCAGGAGATTACGCGTCCGGGAACTCACGGATAAAGCGTTCGACATCTTCa < 1:35043/150‑1 (MQ=255) cGGTGCTGTGGGAGAATCGTCAGAGTTCGCCAGTGACAAGAGTCAACATTGCGCAGCAATAAAAACGCCTCTCCGTGTGGAGAGGCGCAGGAGATTAcgc < 1:88444/100‑1 (MQ=255) cGGTGCTGTGGGAGAATCGTCAGAGTTCGCCAGTGACAAGAGTCAACATTGCGCAGCAATAAAAACGCCTCTCCGTGTGGAGAGGCGCAGGAGATTAcgc > 2:88444/1‑100 (MQ=255) ggAGAATCGTCAGAGTTCGCCAGTGACAAGAGTCAACATTGCGCAGCAATAAAAACGCCTCTCCGTGTGGAGAGGCGCAGGAGATTACGCGTCCGGGAACTCACGGATAAAGCGTTCGACATCTTCAACCATATGGTCGTTGCCGACaaa > 3:99899/1‑150 (MQ=255) aaTCGTCAGAGTTCGCCAGTGACAAGAGTCAACATTGCGCAGCAATAAAAACGCCTCTCCGTGTGGAGAGGCGCAGGAGATTACGCGTCCGGGAACTCACGGATAAAGCGTTCGACATCTTCAACCATATGGTCGTTGCCGACAAAGAAt < 4:99899/150‑1 (MQ=255) agTTCGCCAGTGACAAGAGTCAACATTGCGCAGCAATAAAAACGCCTCTCCGTGTGGAGAGGCGCAGGAGATTACGCGTCCGGGAACTCACGGATAAAGCGTTCGACATCTTCAACCATATGGTCGTTGc < 1:88321/130‑1 (MQ=255) agTTCGCCAGTGACAAGAGTCAACATTGCGCAGCAATAAAAACGCCTCTCCGTGTGGAGAGGCGCAGGAGATTACGCGTCCGGGAACTCACGGATAAAGCGTTCGACATCTTCAACCATATGGTCGTTGc > 2:88321/1‑130 (MQ=255) ccAGTGACAAGAGTCAACATTGCGCAGCAATAAAAACGCCTCTCCGTGTggagaggcgtttttattgctgcgcaatgttgactcttgtcactggcgaactctgacgattctccc > 1:85569‑M2/1‑49 (MQ=255) ccAGTGACAAGAGTCAACATTGCGCAGCAATAAAAACGCCTCTCCGTGTggagaggcgtttttattgctgcgcaatgttgactcttgtcactggcgaactctgacgattctccc < 2:85569‑M2/114‑66 (MQ=255) cAACATTGCGCAGCAATAAAAACGCCTCTCCGTGTggagaggcgtttttattgctgcgcaatgttgactcttgtcactggcgaactctgacgattctcccacagcaccgttaatccacgctgtaatgctataaaaataaacaacaaaata < 1:164886‑M2/150‑116 (MQ=255) gcagcaATAAAAACGCCTCTCCGTGTGGAGAGGCGCAGGAGATTACGCGTCCGGGAACTCACGGATAAAGCGTTCGACATCTTCa < 3:6341/85‑1 (MQ=255) gcagcaATAAAAACGCCTCTCCGTGTGGAGAGGCGCAGGAGATTACGCGTCCGGGAACTCACGGATAAAGCGTTCGACATCTTCa > 4:6341/1‑85 (MQ=255) gcGCCTCTCCACACGGAGAGGCGTAGGAGATTACGCGTCCGGGAACTCACGGATAAAGCGTTCGACATCTTCAACCATATGGTCGTTGCCGa < 2:140828/91‑1 (MQ=38) aCGCCTCTCCGTGTGGAGAGGCGCAGGAGATTACGCGTCCGGGAACTCACGGATAAAGCGTTCGACATCTTCAACCATATGGTCGTTGCCGACAAAGAATGAACGGCGCTGGTGCAGGGTTTCCGGGATGATATCCAGAATACGCTCttt > 2:134615/1‑150 (MQ=255) | ATTACAGCGTGGATTAACGGTGCTGTGGGAGAATCGTCAGAGTTCGCCAGTGACAAGAGTCAACATTGCGCAGCAATAAAAACGCCTCTCCGTGTGGAGAGGCGCAGGAGATTACGCGTCCGGGAACTCACGGATAAAGCGTTCGACATCTTCAACCATATGGTCGTTGCCGACAAAGAATGAACGGCGCTGGTGCAGGGTTTCCGGGATGATATCCAGAATACGCTCTTT > NC_000913_3_pae_tpiA/4454416‑4454646 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |