New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 1445179	15 (0.960)	4 (0.280)	4/230	1.4	22.3%	coding (2129/2640 nt)	ydbH	putative membrane‑anchored protein, function unknown
	?	NC_000913_3_pae_tpiA	= 1445190	14 (0.970)					coding (2140/2640 nt)	ydbH	putative membrane‑anchored protein, function unknown

CGAAAAATATTACGGCTGATTTGCAAGGGCGTTATCCGTGGACTGAAGAAGAACCCTTGCTGTTGACTGATGTTAGCGTCGATGTGTTAGGCGGTAACGTACTGATGAAACAATTACGTATGCCGCAACATGACCCGGCGCTGTTGCGGCTGAATAATCTCTCATCCAGCGAACTGGTTAGCGCCGTCAATCCGAAACAATTCGCCATGTCCGGGGCATTTAGTGGTGCACTGCCGTTATGGCTGAACAATGAAAAATGGATTGTGAAAGATGGCTGGCT  >  NC_000913_3_pae_tpiA/1445050‑1445329                                                                                                                                             |                                                                                                                                            cGAAAAATATTACGGCTGATTTGCAAGGGCGTTATCCGTGGACTGAAGAAGAACCCTTGCTGTTGACTGATGTTAGCGTCGATGTGTTAGGCGGTAACGTACTGATGAAACAATTACGTATGCCGCAACATGACCCGGCGCtgttgcggc                                                                                                                                    <  1:48346‑M2/150‑10 (MQ=255)          ttACGGCTGATTTGCAAGGGCGTTATCCGTGGACTGAAGAAGAACCCTTGCTGTTGACTGATGTTAGCGTCGATGTGTTAGGCGGTAACGTACTGATGAAACAATTACGTATGCCGCAACATGACCCGGCGCTGTTGCGGCTGAATAAtc                                                                                                                           >  3:62391/1‑150 (MQ=255)               gCTGATTTGCAAGGGCGTTATCCGTGGACTGAAGAAGAACCCTTGCTGTTGACTGATGTTAGCGTCGATGTGTTAGGCGGTAACGTACTGATGAAACAATTACGTATGCCGCAACATGACCCGGCGCTGTTGCGGCTGAATAATCTCTCa                                                                                                                      <  2:32401/150‑1 (MQ=255)                                     cGTGGACTGAAGAAGAACCCTTGCTGTTGACTGATGTTAGCGTCGATGTGTTAGGCGGTAACGTACTGATGAAACAATTACGTATGCCGCAACATGACCCGGCGCTGTTGCGGCTGAATAATCTCTCATCCAGCGAACTGGTTAGCGCCg                                                                                                <  4:62391/150‑1 (MQ=255)                                            tGAAGAAGAACCCTTGCTGTTGACTGATGTTAGCGTCGATGTGTTAGGCGGTAACGTACTGATGAAACAATTACGTATGCCGCAACATGACCCGGCGCTGTTGCGGCTGAATAATCTCTCATCCAGCGAACTGGTTAGCGCCGTCAATcc                                                                                         >  4:23487/1‑150 (MQ=255)                                                                tGACTGATGTTAGCGTCGATGTGTTAGGCGGTAACGTACTGATGAAACAATTACGTATGCCGCAACATGACCCGGCGCTGTTGCGGCTGAATAATCTCTCATCCAGCGAACTGGTTAGCGCCGTCAATCCGAAACAATTCGCCATGTCCg                                                                     <  2:48346/150‑1 (MQ=255)                                                                                            cGGTAACGTACTGATGAAACAATTACGTATGCCGCAACATGACCCGGCGCTGTTGCGGCTGAATAATCTCTCATCCAGCGAACTGGTTAGCGCCGTCAATCCGAAACAATTCGc                                                                             >  1:21444/1‑114 (MQ=255)                                                                                            cGGTAACGTACTGATGAAACAATTACGTATGCCGCAACATGACCCGGCGCTGTTGCGGCTGAATAATCTCTCATCCAGCGAACTGGTTAGCGCCGTCAATCCGAAACAATTCGc                                                                             <  2:21444/114‑1 (MQ=255)                                                                                                    tACTGATGAAACAATTACGTATGCCGCAACATGACCCGGCGCTGTTGCGGCTGAATAATCTCTCATCCAGCGAACTGGTTAGCGCCGTCAATCCGAAACAATTCGCCATGTCCGGGGCATTTAGTGGTGCACTGCCGTTATgg                                        >  4:23007/1‑143 (MQ=255)                                                                                                    tACTGATGAAACAATTACGTATGCCGCAACATGACCCGGCGCTGTTGCGGCTGAATAATCTCTCATCCAGCGAACTGGTTAGCGCCGTCAATCCGAAACAATTCGCCATGTCCGGGGCATTTAGTGGTGCACTGCCGTTATgg                                        <  3:23007/143‑1 (MQ=255)                                                                                                           gaAACAATTACGTATGCCGCAACATGACCCGGCGCtgttgcggcatacgtaattgtttcatcagtacgttaccgcctaacacatcgacgctaacatcagtcaacagcaag                                                                  >  4:91038‑M2/1‑35 (MQ=255)                                                                                                           gaAACAATTACGTATGCCGCAACATGACCCGGCGCtgttgcggcatacgtaattgtttcatcagtacgttaccgcctaacacatcgacgctaacatcagtcaacagcaag                                                                  <  3:91038‑M2/110‑76 (MQ=255)                                                                                                              aCAATTACGTATGCCGCAACATGACCCGGCGCTGTTGCGGCTGAATAATCTCTCATCCAGCGAACTGGTTAGCGCCGTCAATCCGAAACAATTCGCCATGTCCGGGGCATTTAgtggtg                                                      <  4:104513/119‑1 (MQ=255)                                                                                                              aCAATTACGTATGCCGCAACATGACCCGGCGCTGTTGCGGCTGAATAATCTCTCATCCAGCGAACTGGTTAGCGCCGTCAATCCGAAACAATTCGCCATGTCCGGGGCATTTAgtggtg                                                      >  3:104513/1‑119 (MQ=255)                                                                                                                           ccGCAACATGACCCGGCGCtgttgcggcatacgtaattgtttcatcagtacgttaccgcctaacacatcgacgctaacatcagtcaaca                                                                       >  3:117375‑M2/1‑19 (MQ=255)                                                                                                                           ccGCAACATGACCCGGCGCtgttgcggcatacgtaattgtttcatcagtacgttaccgcctaacacatcgacgctaacatcagtcaaca                                                                       <  4:117375‑M2/89‑71 (MQ=255)                                                                                                                              cAACATGACCCGGCGCTGTTGCGGCTGAATAAtctct                                                                                                                        <  2:150992/37‑1 (MQ=255)                                                                                                                              cAACATGACCCGGCGCTGTTGCGGCTGAATAAtctct                                                                                                                        >  1:150992/1‑37 (MQ=255)                                                                                                                                   aaaaacGGCGCTGTTGCGGCTGAATAATCTCTCATCCAGCGAACTGGTTAGCGCCGTCAATCCGAAACAATTCGCCATGTCCGGGGCATTTAGTGGTGCACTGCCGTTATGGCTGAACAATGAAAAATGGATTGTGTAAGAtggctggct  <  2:45161/145‑1 (MQ=255)                                                                                                                                             |                                                                                                                                            CGAAAAATATTACGGCTGATTTGCAAGGGCGTTATCCGTGGACTGAAGAAGAACCCTTGCTGTTGACTGATGTTAGCGTCGATGTGTTAGGCGGTAACGTACTGATGAAACAATTACGTATGCCGCAACATGACCCGGCGCTGTTGCGGCTGAATAATCTCTCATCCAGCGAACTGGTTAGCGCCGTCAATCCGAAACAATTCGCCATGTCCGGGGCATTTAGTGGTGCACTGCCGTTATGGCTGAACAATGAAAAATGGATTGTGAAAGATGGCTGGCT  >  NC_000913_3_pae_tpiA/1445050‑1445329

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.