mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_tpiA | 3,817,949 | 0 | A | C | 20.6% | 57.1 / 12.2 | 34 | I64L (ATC→CTC) | dinD | DNA damage‑inducible protein |
| Marginal new junction evidence (lowest skew 10 of 85 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 377420 | 46 (1.630) | 5 (0.190) | 5/274 | 3.0 | 10.2% | noncoding (86/187 nt) | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913_3_pae_tpiA | = 4027573 | NA (NA) | noncoding (252/281 nt) | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| * | ? | NC_000913_3_pae_tpiA | 4216179 = | 24 (0.850) | 4 (0.150) | 4/274 | 3.4 | 14.8% | coding (786/1602 nt) | aceB | malate synthase A |
| ? | NC_000913_3_pae_tpiA | 4216194 = | 23 (0.850) | coding (801/1602 nt) | aceB | malate synthase A | |||||
| * | ? | NC_000913_3_pae_tpiA | = 4153544 | 70 (2.490) | 3 (0.130) +26 bp |
3/234 | 3.4 | 5.0% | noncoding (282/346 nt) | REP309 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP309 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913_3_pae_tpiA | = 4153609 | NA (NA) | intergenic (‑595/+3) | ppc/argE | phosphoenolpyruvate carboxylase/acetylornithine deacetylase | |||||
| * | ? | NC_000913_3_pae_tpiA | = 4115916 | 43 (1.530) | 4 (0.150) | 4/276 | 3.4 | 9.0% | coding (1223/1509 nt) | glpK | glycerol kinase |
| ? | NC_000913_3_pae_tpiA | = 4115921 | 39 (1.440) | coding (1218/1509 nt) | glpK | glycerol kinase | |||||
| * | ? | NC_000913_3_pae_tpiA | 4049740 = | 62 (2.200) | 4 (0.150) | 4/272 | 3.4 | 6.9% | coding (2775/2787 nt) | polA | 5' to 3' DNA polymerase and 3' to 5'/5' to 3' exonuclease |
| ? | NC_000913_3_pae_tpiA | 4049764 = | 49 (1.830) | intergenic (+12/‑135) | polA/spf | 5' to 3' DNA polymerase and 3' to 5'/5' to 3' exonuclease/Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent | |||||
| * | ? | NC_000913_3_pae_tpiA | = 4027573 | NA (NA) | 4 (0.150) | 4/274 | 3.4 | NA | noncoding (252/281 nt) | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913_3_pae_tpiA | = 4027601 | NA (NA) | noncoding (280/281 nt) | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| * | ? | NC_000913_3_pae_tpiA | 2304842 = | NA (NA) | 4 (0.150) | 4/272 | 3.4 | 9.7% | noncoding (426/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913_3_pae_tpiA | 4027518 = | 39 (1.390) | noncoding (197/281 nt) | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| * | ? | NC_000913_3_pae_tpiA | 2304842 = | NA (NA) | 4 (0.150) | 4/272 | 3.4 | 11.3% | noncoding (426/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913_3_pae_tpiA | 3042440 = | 33 (1.170) | noncoding (120/155 nt) | REP210 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP210 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | NC_000913_3_pae_tpiA | 2304842 = | NA (NA) | 4 (0.150) | 4/272 | 3.4 | NA | noncoding (426/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913_3_pae_tpiA | = 2431012 | NA (NA) | noncoding (84/84 nt) | REP169 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP169 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913_3_pae_tpiA | 2304842 = | NA (NA) | 4 (0.150) | 4/272 | 3.4 | NA | noncoding (426/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913_3_pae_tpiA | = 2347327 | NA (NA) | noncoding (168/203 nt) | REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences | REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences | |||||