New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 1062575	NA (NA)	4 (0.140)	4/276	3.6	12.1%	coding (281/306 nt)	cbpM	modulator of CbpA co‑chaperone
	?	NC_000913_3_pae_tpiA	= 1062596	29 (1.040)					coding (260/306 nt)	cbpM	modulator of CbpA co‑chaperone
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_tpiA/1062433‑1062575 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaaaACCGCCTGCTGCGCCAGCGGCTTTCCCG  <  NC_000913_3_pae_tpiA/1062596‑1062569                                                                                                                                                                             TCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCCAACACACATCACGGATGAGCTACAAACCGCGAAAACCGCt                        >  2:73270/1‑148                      AGTTGCCGGATGCGGCGTGAACGTCTTACCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCAGGAAAACCGCCTGCTGCGCCAGCGGCTTTCCC   <  1:206671/149‑1                                                                                                              AACACACATCACGGATGAGCTACAAACCGGGAAAACCGCCTGCTGCGCCAGCGGCTTTCCCG  <  1:396795/62‑1                                                                                                              AACACACATCACGGATGAGCTACAAACCGGGAAAACCGCCTGCTGCGCCAGCGGCTTTCCCG  >  2:396795/1‑62                                                                                                                                                                             TCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_tpiA/1062433‑1062575 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaaaACCGCCTGCTGCGCCAGCGGCTTTCCCG  <  NC_000913_3_pae_tpiA/1062596‑1062569

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.