New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA = 1062575NA (NA)4 (0.140) 4/276 3.6 12.1% coding (281/306 nt) cbpM modulator of CbpA co‑chaperone
?NC_000913_3_pae_tpiA = 1062596 29 (1.040)coding (260/306 nt) cbpM modulator of CbpA co‑chaperone
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATGGTCGTCAAATACCCAGGTTGTTTCCTGG  >  NC_000913_3_pae_tpiA/1062461‑1062742
                                                                                                                                       |                                                                                                                                                  
ggATGCGGCGTGAACGTCTTATCCGGCCCACAAACACTATAATCTTGGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAg                                                                                                                                       <  2:105802/149‑1 (MQ=255)
  aTGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGAGGTTTTCCTGCTTCAGGt                                                                                                                                     <  2:490677/149‑1 (MQ=255)
           gAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACACCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAatat                                                                                                                            <  2:186281/149‑1 (MQ=255)
           gAACGGCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAatat                                                                                                                            <  1:294681/149‑1 (MQ=255)
            aaCGTTTTATCCGGCCCACAGGAACGGTAATCTTTGTAGACCGGTGAAGATGCGTCATCGCATCCGTCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATatc                                                                                                                           <  1:19054/149‑1 (MQ=255)
            aaCGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATatc                                                                                                                           >  2:262113/1‑149 (MQ=255)
                     tCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCCGGCGGTTTTCCTTCTTCAGGTGCGCAATATCATCCATTaa                                                                                                                  >  2:472733/1‑149 (MQ=255)
                      ccGGCCCACAGGAACTGTAATCTTTTTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTGTTCCTGCTTCAGGTGCGCAATATCATCCATTAAc                                                                                                                 <  2:401072/149‑1 (MQ=255)
                                     tGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACcgcg                                                                                                  >  2:268734/1‑149 (MQ=255)
                                       tAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTCCAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCCGCTTCAGGTGCGCAAGATCATCCATTAACGCCAGCGCCACCGCGAt                                                                                                >  1:314963/1‑149 (MQ=255)
                                          tCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGCTccc                                                                                             >  1:146284/1‑149 (MQ=255)
                                          tCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATccc                                                                                             >  1:479841/1‑149 (MQ=255)
                                            tttGTAGACGGGTTAGGATGCGTCATCGCATCCTGCAAACACACATCACGGATGAGCTATAAGCGGGGAAAGCCGGTGGCGCAGCAGGCGGTTTTCCTGCATCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCg                                                                                           <  2:339313/149‑1 (MQ=255)
                                                   aCCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCCCGATCCCCGGCCAgcc                                                                                    >  2:368690/1‑147 (MQ=255)
                                                       gTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGCCAGCGCCACCACGATCCCCTGCCCGTcacga                                                                                >  2:224205/1‑145 (MQ=255)
                                                         tAAGATGCGGCATGGCATCCGGCAAACACACAGCACGGATGAGCTAAAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGc                                                                              <  2:135164/149‑1 (MQ=255)
                                                             aTGCATCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTCGCGCAGCAGCCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACATCACCGCCACCGCGATCCCCGCCCCGTCCAAAGCCact                                                                          >  2:91646/1‑147 (MQ=255)
                                                                cGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCa                                                                       <  1:268734/149‑1 (MQ=255)
                                                                 gTCATCGCATCCGGCAAACACACATCACGGAAGGGCGGCAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGCTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCCACACCCCCCCACTCCCCCGCCAACGCAGAACCAGTTCag                                                                      >  2:32366/1‑148 (MQ=255)
                                                                       gCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCa                                                                <  1:207859/149‑1 (MQ=255)
                                                                              gCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTAc                                                         >  1:401866/1‑149 (MQ=255)
                                                                                         tCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGca                                              >  1:83821/1‑149 (MQ=255)
                                                                                         tCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGca                                              <  1:289119/149‑1 (MQ=255)
                                                                                                     tACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATggcgg                                  <  2:305221/149‑1 (MQ=255)
                                                                                                      aCAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATggcggc                                 <  2:504116/149‑1 (MQ=255)
                                                                                                            cGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATGgtc                           >  2:358776/1‑149 (MQ=255)
                                                                                                             gggAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATGgtcg                          <  1:333403/149‑1 (MQ=255)
                                                                                                                    ccGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATGGTCGTCAAATa                   <  1:358776/149‑1 (MQ=255)
                                                                                                                                     ggTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATGGTCGTCAAATACCCAGGTTGTTTCCTgg  >  1:176921/1‑149 (MQ=255)
                                                                                                                                       |                                                                                                                                                  
GGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATGGTCGTCAAATACCCAGGTTGTTTCCTGG  >  NC_000913_3_pae_tpiA/1062461‑1062742

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.