New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	2177435 =	NA (NA)	4 (0.330)	4/250	1.1	33.3%	noncoding (28/77 nt)	REP151 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP151 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913_3_pae_tpiA	2177460 =	8 (0.660)					noncoding (53/77 nt)	REP151 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP151 (repetitive extragenic palindromic) element; contains 2 REP sequences

AATCGATGGCTGACGGCGTGAAACTGATTAACGCCGTGCAGGACGTTTATCTCGATAGCAAAATTACTATCGCCTGATACGCCTTATACGAACAACACCACCCCGTAGGACGGATAAGGCGTTTACGCTGCATCCGGCAACCTATGCCTGATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_pae_tpiA/2177588‑2177435 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgcAGCGTAAACGCCTTATCCGTCCTACGGGGTGGTGTTGTTC  >  NC_000913_3_pae_tpiA/2177460‑2177499                                                                                                                                                                                                    AATCGATGGCTGACGGCGTGAAACTGATTAACGCCGTGCAGGACGTTTATCTCGATAGCAAAATTACTATCGCCTGATACGCCTTATACGAACAACACCACCCCGTAGGACGGATAAGGCGTTTACGCTGCATCCGGCAACCTATGCCTG                                              >  4:62834/1‑150                                                                                             CAACACCACCCCGTAGAACGGATAAGGCGTTTACGCTGCATCCGGCAACCTATGCCTGATGCAGCGTAAACGCCTTATCCGTCCTACGGGGTGGTGTTG     >  3:41151/1‑99                                                                                             CAACACCACCCCGTAGAACGGATAAGGCGTTTACGCTGCATCCGGCAACCTATGCCTGATGCAGCGTAAACGCCTTATCCGTCCTACGGGGTGGTGTTG     <  4:41151/99‑1                                                                                                                                    ATCCGGCAACCTATGCCTGATGCAGCGTAAACGCCTTATCCGTCCTACGGGGTGGTGTTGTTC  <  3:64379/63‑1                                                                                                                                    ATCCGGCAACCTATGCCTGATGCAGCGTAAACGCCTTATCCGTCCTACGGGGTGGTGTTGTTC  >  4:64379/1‑63                                                                                                                                                                                                    AATCGATGGCTGACGGCGTGAAACTGATTAACGCCGTGCAGGACGTTTATCTCGATAGCAAAATTACTATCGCCTGATACGCCTTATACGAACAACACCACCCCGTAGGACGGATAAGGCGTTTACGCTGCATCCGGCAACCTATGCCTGATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_pae_tpiA/2177588‑2177435 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgcAGCGTAAACGCCTTATCCGTCCTACGGGGTGGTGTTGTTC  >  NC_000913_3_pae_tpiA/2177460‑2177499

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.