| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 2177435 = | NA (NA) | 4 (0.330) | 4/250 | 1.1 | 33.3% | noncoding (28/77 nt) | REP151 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP151 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913_3_pae_tpiA | 2177460 = | 8 (0.660) | noncoding (53/77 nt) | REP151 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP151 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
CAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGTGGCAGTGCTATGTAGGCATGATAAGACGCTTCAGCGTCGCATCAGGCATAGGTTGCCGGATGCAGCGTAAACGCCTTATCCGTCCTACGGGGTGGTGTTGTTCGTATAAGGCGTATCAGGCGATAGTAATTTTGCTATCGAGATAAACGTCCTGCACGGCGTTAATCAGTTTCACGCCGTCAGCCATCGATTTCTT > NC_000913_3_pae_tpiA/2177320‑2177592 | cAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGTGGCAGTGCTATGTAGGCATGATAAGACGCTTCAGCGTCGCATCAGGCATAGGTTGCCGGATGCAGCGTAAACg < 3:92022/150‑1 (MQ=255) aaCGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGTGGCAGTGCTATGTAGGCATGATAAGACGCTTCAGCGTCGCATCAGGCATAGGTTGCCGGATGCAGCGTAAACGcc < 1:79694/146‑1 (MQ=255) aaCGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGTGGCAGTGCTATGTAGGCATGATAAGACGCTTCAGCGTCGCATCAGGCATAGGTTGCCGGATGCAGCGTAAACGcc > 2:79694/1‑146 (MQ=255) caacaccaccccgtaggacggataaggcgtttacgctGCATCAGGCATAGGTTGCCGGATGCAGCGTAAACGCCTTATCCGTTCTACGGGGTGGtgttg > 3:41151‑M1/38‑99 (MQ=255) caacaccaccccgtaggacggataaggcgtttacgctGCATCAGGCATAGGTTGCCGGATGCAGCGTAAACGCCTTATCCGTTCTACGGGGTGGtgttg < 4:41151‑M1/62‑1 (MQ=255) caacaccaccccgtagaacggataaggcgtttacgctgcatccggcaacctatgcctgatgcAGCGTAAACGCCTTATCCGTCCTACGGGGTGGtgttg > 3:41151‑M2/63‑99 (MQ=255) caacaccaccccgtagaacggataaggcgtttacgctgcatccggcaacctatgcctgatgcAGCGTAAACGCCTTATCCGTCCTACGGGGTGGtgttg < 4:41151‑M2/37‑1 (MQ=255) tGCTATGTAGGCATGATAAGACGCTTCAGCGTCGCATCAGGCATAGGTTGCCGGATGCAGCGTAAACGCCTTATCCGTCCTACGGGGTGGTGTTGTTCGTATAAGGCGTATCAGGCGATAGTAATTTTGCTATCGAGATAAACGTCCTGc > 2:96991/1‑150 (MQ=255) tGTAGGCATGATAAGACGCTTCAGCGTCGCATCAGGCATAGGTTGCCGGATGCAGCGTAAACGCCTTATCCGTCCTACGGGGTGGTGTTGTTCGTATAAGGCGTATCAGGCGATAGTAATTTTGCTATCGAGATAAACGTCCTGCACGGc < 1:96991/150‑1 (MQ=255) ggCATGATAAGACGCTTCAGCGTCGCATCAGGCATAGGTTGCCGGATGCAGCGTAAACGCCTTATCCGTCCTACGGGgtggtg > 3:1140/1‑83 (MQ=255) ggCATGATAAGACGCTTCAGCGTCGCATCAGGCATAGGTTGCCGGATGCAGCGTAAACGCCTTATCCGTCCTACGGGgtggtg < 4:1140/83‑1 (MQ=255) atccggcaacctatgcctgatgcAGCGTAAACGCCTTATCCGTCCTACGGGGTGGTGTTGTTc < 3:64379‑M2/40‑1 (MQ=255) atccggcaacctatgcctgatgcAGCGTAAACGCCTTATCCGTCCTACGGGGTGGTGTTGTTc > 4:64379‑M2/24‑63 (MQ=255) CAGGCATAGGTTGCCGGATGCAGCGTAAACGCCTTATCCGTCCTACGGGGTGGTGTTGTTCGTATAAGGCGTATCAGGCGATAGTAATTTTGCTATCGAGATAAACGTCCTGCACGGCGTTAATCAGTTTCACGCCGTCAGCCATCGAtt > 4:62834‑M1/1‑150 (MQ=255) cATAGGTTGCCGGATGCAGCGTAAACGCCTTATCCGTCCTACGGGGTGGTGTTGTTCGTATAAGGCGTATCAGGCGATAGTAATTTTGCTATCGAGATAAACGTCCTGCACGGCGTTAATCAGTTTCACGCCGTCAGCCATCGATTTCtt < 1:95235/150‑1 (MQ=255) | CAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGTGGCAGTGCTATGTAGGCATGATAAGACGCTTCAGCGTCGCATCAGGCATAGGTTGCCGGATGCAGCGTAAACGCCTTATCCGTCCTACGGGGTGGTGTTGTTCGTATAAGGCGTATCAGGCGATAGTAATTTTGCTATCGAGATAAACGTCCTGCACGGCGTTAATCAGTTTCACGCCGTCAGCCATCGATTTCTT > NC_000913_3_pae_tpiA/2177320‑2177592 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |