New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	4201698 =	8 (0.640)	3 (0.280)	3/226	1.2	31.7%	intergenic (‑94/‑144)	zraP/zraS	Zn‑dependent periplasmic chaperone/sensory histidine kinase in two‑component regulatory system with ZraR
	?	NC_000913_3_pae_tpiA	4201744 =	6 (0.550)					intergenic (‑140/‑98)	zraP/zraS	Zn‑dependent periplasmic chaperone/sensory histidine kinase in two‑component regulatory system with ZraR

TCGCCATTGCTGAAAGCGCCATCATTACCAGGGCAATTTTCGTGTTCCGTTTCATGGTTAATCCTCCAGTGGTTGTCTTACTTCGGGTATTGCATCTTCCGTGCCAACGATGAAACGCTGATATGACGGGTAATCTGGCATGATAAACGAGTAAAAATGACTCGCCTGCTGCGGGTAGCGAGTCATTTTTACTCATTGAAACTTAAGCCTTTGTGTTACAGCGCAGGGTAAGCGCTGATAAAAGATGGCATGATTTCTGCTGTCAGAAAGGGATGAGCAGGCAAAGAAGA  >  NC_000913_3_pae_tpiA/4201550‑4201839                                                                                                                                                     |                                                                                                                                              tCGCCATTGCTGAAAGCGCCATCATTACCAGGGCAATTTTCGTGTTCCGTTTCATGGTTAATCCTCCAGTGGTTGTCTTACTTCGGGTATTGCATCTTCCGTGCCAACGATGAAACGCTGATATGACGGGTAATCTAGCATGATAAACGa                                                                                                                                              <  3:44062/150‑1 (MQ=255)              taGCGCCATCATTACCAGGGCAATTTTCGTGTTCCGTTTCATGGTTAATCCTCCAGTGGTTGTCTTACTTCGGGTATTGCATCTTCCGTGCCAACGATGAAACGCTGATATGACGGGTAATCTGGCATGATAAACGAGTAAAAATGACTc                                                                                                                                 <  1:16714/149‑1 (MQ=255)                    aggagtctttagaacgttgcataaaacgcatcttcttctttgcctgctcatccctttctgacagcagaaatcatgccatcttttataagcgcttatcctgcgctgtaacacaaaggcttaagtttcaatGAGGAAaaatgactggcgacc                                                                                                                           <  3:22553‑M1/21‑8 (MQ=255)                                               ccGTTTCATGGTTAATCCTCCAGTGGTTGTCTTACTTCGGGTATTGCCTCTTCCGTGCCCACGATGAGCCGCTGATATGACGGGTAATCTGGCATGATAAACGAGTAAATATGTCTCGCCTGCTGCGGGTAGCGAGTCATTTTTACTCAt                                                                                                >  2:96189/1‑150 (MQ=255)                                                   cttcttctttgcctgctcatccctttctgacagcagaaatcatgccatcttttatcagcgcttaccctgcgctgtaacacaaaggcttaagtttcaatGAGTAAAAATGACTCGCCTGCTGCGGGTAGCGAGTCATTTTTACTCATTGaa                                                                                            >  1:26951‑M1/99‑150 (MQ=255)                                                                                                          aaCGATGAAACGCTGATATGACGGGTAATCTGGCATGATAAACAAGTAAAAATGACTCGCCTGCTGCGGGTAGCGAGTCATTTTTACTCATTGAAACTTAAGCCCTGGTGTTACAGCGCAGGGTAAGCGCTGACAAAAGATGGCATGAtt                                     >  4:38231/1‑150 (MQ=255)                                                                                                             cgcttaccctgcgctgtaacacaaaggcttaagtttcaatGAGTAAAAATGACTCGCCTGCTGCGGGTAGCGAGt                                                                                                             >  3:14859‑M1/41‑75 (MQ=255)                                                                                                             cgcttaccctgcgctgtaacacaaaggcttaagtttcaatGAGTAAAAATGACTCGCCTGCTGCGGGTAGCGAGt                                                                                                             <  4:14859‑M1/35‑1 (MQ=255)                                                                                                                                               aTAAACGAGTAAAAATGACTCGCCTGCTGCGGGTAGCGAGTCATTTTTACTCATTGAAACTTAAGCCTTTGTGTTACAGCGCAGGGTAAGCGCTGATAAAAGATGGCATGATTTCTGCTGTCAGAAAGGGATGAGCAGGCAaagaaga  >  1:51933/1‑148 (MQ=255)                                                                                                                                               aTAAACGAGTAAAAATGACTCGCCTGCTGCGGGTAGCGAGTCATTTTTACTCATTGAAACTTAAGCCTTTGTGTTACAGCGCAGGGTAAGCGCTGATAAAAGATGGCATGATTTCTGCTGTCAGAAAGGGATGAGCAGGCAaagaaga  <  2:51933/148‑1 (MQ=255)                                                                                                                                                  aaCGAGTAAAAATGACTCGCCTGCTGCGGGTAGCGAGTCATTTTTACTCATTGAAACTTAAGCCTTTGTGTTACAGCGCAGGGTAAGCGCTGATAAAAGATGGCATGATTTCTGCTGTCAGaa                        <  1:38016/123‑1 (MQ=255)                                                                                                                                                  aaCGAGTAAAAATGACTCGCCTGCTGCGGGTAGCGAGTCATTTTTACTCATTGAAACTTAAGCCTTTGTGTTACAGCGCAGGGTAAGCGCTGATAAAAGATGGCATGATTTCTGCTGTCAGaa                        >  2:38016/1‑123 (MQ=255)                                                                                                                                                     |                                                                                                                                              TCGCCATTGCTGAAAGCGCCATCATTACCAGGGCAATTTTCGTGTTCCGTTTCATGGTTAATCCTCCAGTGGTTGTCTTACTTCGGGTATTGCATCTTCCGTGCCAACGATGAAACGCTGATATGACGGGTAATCTGGCATGATAAACGAGTAAAAATGACTCGCCTGCTGCGGGTAGCGAGTCATTTTTACTCATTGAAACTTAAGCCTTTGTGTTACAGCGCAGGGTAAGCGCTGATAAAAGATGGCATGATTTCTGCTGTCAGAAAGGGATGAGCAGGCAAAGAAGA  >  NC_000913_3_pae_tpiA/4201550‑4201839

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.