New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	4201698 =	8 (0.640)	3 (0.280)	3/226	1.2	31.7%	intergenic (‑94/‑144)	zraP/zraS	Zn‑dependent periplasmic chaperone/sensory histidine kinase in two‑component regulatory system with ZraR
	?	NC_000913_3_pae_tpiA	4201744 =	6 (0.550)					intergenic (‑140/‑98)	zraP/zraS	Zn‑dependent periplasmic chaperone/sensory histidine kinase in two‑component regulatory system with ZraR

CCGTTTCATGGTTAATCCTCCAGTGGTTGTCTTACTTCGGGTATTGCATCTTCCGTGCCAACGATGAAACGCTGATATGACGGGTAATCTGGCATGATAAACGAGTAAAAATGACTCGCCTGCTGCGGGTAGCGAGTCATTTTTACTCATTGAAACTTAAGCCTTTGTGTTACAGCGCAGGGTAAGCGCTGATAAAAGATGGCATGATTTCTGCTGTCAGAAAGGGATGAGCAGGCAAAGAAGAAGATGCGTTTTATGCAACGTTCTAAAGACTCCT  >  NC_000913_3_pae_tpiA/4201596‑4201872                                                                                                                                                     |                                                                                                                                 ccGTTTCATGGTTAATCCTCCAGTGGTTGTCTTACTTCGGGTATTGCCTCTTCCGTGCCCACGATGAGCCGCTGATATGACGGGTAATCTGGCATGATAAACGAGTAAATATGTCTCGCCTGCTGCGGGTAGCGAGTCATTTTTACTCAt                                                                                                                                 >  2:96189/1‑150 (MQ=255)     cttcttctttgcctgctcatccctttctgacagcagaaatcatgccatcttttatcagcgcttaccctgcgctgtaacacaaaggcttaagtttcaatGAGTAAAAATGACTCGCCTGCTGCGGGTAGCGAGTCATTTTTACTCATTGaa                                                                                                                             >  1:26951‑M1/99‑150 (MQ=255)                                                            aaCGATGAAACGCTGATATGACGGGTAATCTGGCATGATAAACAAGTAAAAATGACTCGCCTGCTGCGGGTAGCGAGTCATTTTTACTCATTGAAACTTAAGCCCTGGTGTTACAGCGCAGGGTAAGCGCTGACAAAAGATGGCATGAtt                                                                      >  4:38231/1‑150 (MQ=255)                                                                                                 ttcaatgagtaaaaatgactcgctacccgcagcaggcgagtcatttttactcATTGAAACTTAAGCCTTTGTGTTACAGCGCAGGGTAAGCGCTGATAAAAGATGGCATGATTTCTGCTGTCAGAAAGGGATGAGCAGGCAaagaagaag                                 >  1:26951‑M2/53‑150 (MQ=255)                                                                                                 aTAAACGAGTAAAAATGACTCGCCTGCTGCGGGTAGCGAGTCATTTTTACTCATTGAAACTTAAGCCTTTGTGTTACAGCGCAGGGTAAGCGCTGATAAAAGATGGCATGATTTCTGCTGTCAGAAAGGGATGAGCAGGCAaagaaga                                   >  1:51933/1‑148 (MQ=255)                                                                                                 aTAAACGAGTAAAAATGACTCGCCTGCTGCGGGTAGCGAGTCATTTTTACTCATTGAAACTTAAGCCTTTGTGTTACAGCGCAGGGTAAGCGCTGATAAAAGATGGCATGATTTCTGCTGTCAGAAAGGGATGAGCAGGCAaagaaga                                   <  2:51933/148‑1 (MQ=255)                                                                                                    aaCGAGTAAAAATGACTCGCCTGCTGCGGGTAGCGAGTCATTTTTACTCATTGAAACTTAAGCCTTTGTGTTACAGCGCAGGGTAAGCGCTGATAAAAGATGGCATGATTTCTGCTGTCAGaa                                                         <  1:38016/123‑1 (MQ=255)                                                                                                    aaCGAGTAAAAATGACTCGCCTGCTGCGGGTAGCGAGTCATTTTTACTCATTGAAACTTAAGCCTTTGTGTTACAGCGCAGGGTAAGCGCTGATAAAAGATGGCATGATTTCTGCTGTCAGaa                                                         >  2:38016/1‑123 (MQ=255)                                                                                                         GTAAAAATGACTCGCCTGCTGCGGGTAGCGAGTCATTTTTACTCATTGAAACTTAAGCCTTTGTGTTACAGCGCAGGGTAAGCGCTGATAAAAGATGGCATGATTTCTGCTGTCAGAAAGGGATGAGCAGGCaaa                                        >  1:79286‑M1/1‑135 (MQ=255)                                                                                                         GTAAAAATGACTCGCCTGCTGCGGGTAGCGAGTCATTTTTACTCATTGAAACTTAAGCCTTTGTGTTACAGCGCAGGGTAAGCGCTGATAAAAGATGGCATGATTTCTGCTGTCAGAAAGGGATGAGCAGGCaaa                                        <  2:79286‑M1/135‑1 (MQ=255)                                                                                                                  actcgctacccgcagcaggcgagtcatttttactcATTGAAACTTAAGCCTTTGTGTTACAGCGCAGGGTAAgcg                                                                                           >  3:14859‑M2/36‑75 (MQ=255)                                                                                                                  actcgctacccgcagcaggcgagtcatttttactcATTGAAACTTAAGCCTTTGTGTTACAGCGCAGGGTAAgcg                                                                                           <  4:14859‑M2/40‑1 (MQ=255)                                                                                                                                ggtcgccagtcatttttcctcATTGAAACTTAAGCCTTTGTGTTACAGCGCAGGATAAGCGCTTATAAAAGATGGCATGATTTCTGCTGTCAGAAAGGGATGAGCAGGCAAAGAAGAAGATGCGTTTTATGCAACGTTCTAAAGACTCCt  <  3:22553‑M2/129‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                 CCGTTTCATGGTTAATCCTCCAGTGGTTGTCTTACTTCGGGTATTGCATCTTCCGTGCCAACGATGAAACGCTGATATGACGGGTAATCTGGCATGATAAACGAGTAAAAATGACTCGCCTGCTGCGGGTAGCGAGTCATTTTTACTCATTGAAACTTAAGCCTTTGTGTTACAGCGCAGGGTAAGCGCTGATAAAAGATGGCATGATTTCTGCTGTCAGAAAGGGATGAGCAGGCAAAGAAGAAGATGCGTTTTATGCAACGTTCTAAAGACTCCT  >  NC_000913_3_pae_tpiA/4201596‑4201872

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.