New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913_3_pae_tpiA | = 2075085 | 14 (1.120) | 5 (0.430) | 5/244 | 0.9 | 28.5% | coding (307/1533 nt) | yeeR | CP4‑44 prophage; putative membrane protein |
? | NC_000913_3_pae_tpiA | = 2075092 | 12 (1.020) | coding (314/1533 nt) | yeeR | CP4‑44 prophage; putative membrane protein |
AACCCGGTTGTTCCATATTCGCTGGCTGGCAGGCGTATTTCTGACGATTGCCGGAATGATCATCAGCTTCATGTGGGGACTTGATGGTAAACATATCGCGCTGGAGGCTCACACCTTTGACTCTGTGAAATTTATTCTGACCACCGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCTGCAGATCAAAAACATTCAGCAGAACGGGATCACACCAGAAGATATCAGCAAGGAAATTAACGGGTATTACTGCTGTTTTTATACTGCCTTTTTCCTTATGGCGTGTTCTGCATGC > NC_000913_3_pae_tpiA/2074940‑2075231 | aaCCCGGTTGTTCCATATTCGCTGGCTGGCAGGCGTATTTCTGACGATTGCCGGAATGATCATCAGCTTCATGTGGGGACTTGATGGTAAACATATCGCGCTGGAGGCTCACACCTTTGACTCTGTGAAATTTATTCTGACCACCGctct > 2:91743/1‑150 (MQ=255) aCCCGGTTGTTCCATATTCGCTGGCTGGCAGGCGTATTTCTGACGATTGCCGGAATGATCATCAGCTTCATGTGGGGACTTGATGGTAAACATATCGCGCTGGAGGCTCACACCTTTGACTCTGTGAAATTTATTCTGACCACCGCtctc < 1:91743/150‑1 (MQ=255) ccGGTTGTTCCATATTCGCTGGCTGGCAGGCGTATTTCTGACGATTGCCGGAATGATCATCAGCTTCATGTGGGGACTTGATGGTAAACATATCGCGCTGGAGGCTCACACCTTTGACTCTGTGAAATTTATTCTGACCACCGCTCTCGc > 2:36706/1‑150 (MQ=255) tgttCCATATTCGCTGGCTGGCAGGCGTATTTCTGACGATTGCCGGAATGATCATCAGCTTCATGTGGGGACTTGATGGTAAACATATCGCGCTGGAGGCTCACACCTTTGACTCTGTGAAATTTATTCTGACCACCGgcgagagcggtg < 2:113396‑M1/150‑13 (MQ=255) ttCGCTGGCTGGCAGGCGTATTTCTGACGATTGCCGGAATGATCATCAGCTTCATGTGGGGACTTGATGGTAAACATATCGCGCTGGAGGCTCACACCTTTGACTCTGTGAAATTTATTCTGACCACCGCTCTCGCCGGTGGTCTgctgg < 2:123696/150‑1 (MQ=255) tttCTGACGATTGCCGGAATGATCATCAGCTTCATGTGGGGACTTGATGGTAAACATATCGCGCTGGAGGCTCACACCTTTGACTCTGTGAAATTTATTCTGACCACCGgcgagagcggtggtcagaataaatttcaca > 1:18473‑M1/1‑109 (MQ=255) tttCTGACGATTGCCGGAATGATCATCAGCTTCATGTGGGGACTTGATGGTAAACATATCGCGCTGGAGGCTCACACCTTTGACTCTGTGAAATTTATTCTGACCACCGgcgagagcggtggtcagaataaatttcaca < 2:18473‑M1/139‑31 (MQ=255) gATCATCAGCTTCATGTGGGGACTTGATGGTAAACATATCGCGCTGGAGGCTCACACCTTTGACTCTGTGAAATTTATTCTGACCACCGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCTGCAGATCAAAAACATTCAGCAGAACGGGAt < 4:9949/150‑1 (MQ=255) tcatcaGCTTCATGTGGGGACTTGATGGTAAACATATCGCGCTGGAGGCTCACACCTTTGACTCTGTGAAATTTATTCTGACCACCGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCTGCAGATCAAAAACATTCAGCAGAACGGGATca > 2:124329/1‑150 (MQ=255) tgGGGACTTGATGGTAAACATATCGCGCTGGAGGCTCACACCTTTGACTCTGTGAAATTTATTCTGACCACCGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCTGCAGATCAAAAACATTCAGCAGAACGGGATCACACCAGAAGATATc > 2:65224/1‑150 (MQ=255) gggACTTGATGGTAAACATATCGCGCTGGAGGCTCACACCTTTGACTCTGTGAAATTTATTCTGACCACCGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCTGCAGATCAAAAACATTCAGCAGAACGGGATCACACCAGAAGATATCAg > 2:61936/1‑150 (MQ=255) gATGGTAAACATATCGCGCTGGAGGCTCACACCTTTGACTCTGTGAAATTTATTCTGACCACCGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCTGCAGATCAAAAACATTCAGCAGAACGGGATCACACCAGAAGATATCAGCAAGGaa > 2:43845/1‑150 (MQ=255) acacCTTTGACTCTGTGAAATTTATTCTGACCACCGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCTGCAGATCAAAAACATTCAGCAGAACGGGATca < 2:18488/99‑1 (MQ=255) acacCTTTGACTCTGTGAAATTTATTCTGACCACCGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCTGCAGATCAAAAACATTCAGCAGAACGGGATca > 1:18488/1‑99 (MQ=255) tttGACTCTGTGAAATTTATTCTGACCACCGgcgagagcggtggt > 1:88489‑M1/1‑31 (MQ=255) tttGACTCTGTGAAATTTATTCTGACCACCGgcgagagcggtggt < 2:88489‑M1/45‑15 (MQ=255) tgtgAAATTTATTCTGACCACCGCTCTCGCcggtggtcagaataaatttcacagagtcaaaggtgtgagcctccagcgcgatatgtttaccatcaagtccccacatgaagctgatgatcattccggcaatcgtcagaaa < 2:18473‑M2/139‑110 (MQ=255) tgtgAAATTTATTCTGACCACCGCTCTCGCcggtggtcagaataaatttcacagagtcaaaggtgtgagcctccagcgcgatatgtttaccatcaagtccccacatgaagctgatgatcattccggcaatcgtcagaaa > 1:18473‑M2/1‑30 (MQ=255) tATTCTGACCACCGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCTGCAGATCAAAAACATTCAGCAGAACGGGATCACACCAGAAGATATCAGCAAGGAAATTAACGGGTATTACTGCTGTTTTTATACTGCCTTTTTCCTTATGGCgtg < 1:61936/150‑1 (MQ=255) gACCACCGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCTGCAGATCAAAAACATTCAGCAGAACGGGATCACACCAGAAGATATCAGCAAGGAAATTAACGGGTATTACTGCTGTTTTTATACTGCCTTTTTCCTTATGGCGTGTTCTGc < 1:65224/150‑1 (MQ=255) accaccGCTCTCGCcggtggtcagaataaatttcacagagtcaaa > 1:88489‑M2/1‑14 (MQ=255) accaccGCTCTCGCcggtggtcagaataaatttcacagagtcaaa < 2:88489‑M2/45‑32 (MQ=255) caccGCTCTCGCcggtggtcagaataaatttcacagagtcaaaggtgtgagcctccagcgcgatatgtttaccatcaagtccccacatgaagctgatgatcattccggcaatcgtcagaaatacgcctgccagccagcgaatatggaaca < 2:113396‑M2/150‑139 (MQ=255) accGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCTGCAGATCAAAAACATTCAGCAGAACGGGATCACACCAGAAGATATCAGCAAGGAAATTAACGGGTATTACTGCTGTTTTTATACTGCCTTTTTCCTTATGGCGTGTTCTGCATgc < 1:124329/150‑1 (MQ=255) | AACCCGGTTGTTCCATATTCGCTGGCTGGCAGGCGTATTTCTGACGATTGCCGGAATGATCATCAGCTTCATGTGGGGACTTGATGGTAAACATATCGCGCTGGAGGCTCACACCTTTGACTCTGTGAAATTTATTCTGACCACCGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCTGCAGATCAAAAACATTCAGCAGAACGGGATCACACCAGAAGATATCAGCAAGGAAATTAACGGGTATTACTGCTGTTTTTATACTGCCTTTTTCCTTATGGCGTGTTCTGCATGC > NC_000913_3_pae_tpiA/2074940‑2075231 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |