New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 2075085	14 (1.120)	5 (0.430)	5/244	0.9	28.5%	coding (307/1533 nt)	yeeR	CP4‑44 prophage; putative membrane protein
	?	NC_000913_3_pae_tpiA	= 2075092	12 (1.020)					coding (314/1533 nt)	yeeR	CP4‑44 prophage; putative membrane protein

CCGGTTGTTCCATATTCGCTGGCTGGCAGGCGTATTTCTGACGATTGCCGGAATGATCATCAGCTTCATGTGGGGACTTGATGGTAAACATATCGCGCTGGAGGCTCACACCTTTGACTCTGTGAAATTTATTCTGACCACCGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCTGCAGATCAAAAACATTCAGCAGAACGGGATCACACCAGAAGATATCAGCAAGGAAATTAACGGGTATTACTGCTGTTTTTATACTGCCTTTTTCCTTATGGCGTGTTCTGCATGCGCACCAT  >  NC_000913_3_pae_tpiA/2074943‑2075238                                                                                                                                                      |                                                                                                                                                   ccGGTTGTTCCATATTCGCTGGCTGGCAGGCGTATTTCTGACGATTGCCGGAATGATCATCAGCTTCATGTGGGGACTTGATGGTAAACATATCGCGCTGGAGGCTCACACCTTTGACTCTGTGAAATTTATTCTGACCACCGCTCTCGc                                                                                                                                                    >  2:36706/1‑150 (MQ=255)               ttCGCTGGCTGGCAGGCGTATTTCTGACGATTGCCGGAATGATCATCAGCTTCATGTGGGGACTTGATGGTAAACATATCGCGCTGGAGGCTCACACCTTTGACTCTGTGAAATTTATTCTGACCACCGCTCTCGCCGGTGGTCTgctgg                                                                                                                                      <  2:123696/150‑1 (MQ=255)                                                       gATCATCAGCTTCATGTGGGGACTTGATGGTAAACATATCGCGCTGGAGGCTCACACCTTTGACTCTGTGAAATTTATTCTGACCACCGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCTGCAGATCAAAAACATTCAGCAGAACGGGAt                                                                                              <  4:9949/150‑1 (MQ=255)                                                         tcatcaGCTTCATGTGGGGACTTGATGGTAAACATATCGCGCTGGAGGCTCACACCTTTGACTCTGTGAAATTTATTCTGACCACCGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCTGCAGATCAAAAACATTCAGCAGAACGGGATca                                                                                            >  2:124329/1‑150 (MQ=255)                                                                       tgGGGACTTGATGGTAAACATATCGCGCTGGAGGCTCACACCTTTGACTCTGTGAAATTTATTCTGACCACCGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCTGCAGATCAAAAACATTCAGCAGAACGGGATCACACCAGAAGATATc                                                                              >  2:65224/1‑150 (MQ=255)                                                                         gggACTTGATGGTAAACATATCGCGCTGGAGGCTCACACCTTTGACTCTGTGAAATTTATTCTGACCACCGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCTGCAGATCAAAAACATTCAGCAGAACGGGATCACACCAGAAGATATCAg                                                                            >  2:61936/1‑150 (MQ=255)                                                                                gATGGTAAACATATCGCGCTGGAGGCTCACACCTTTGACTCTGTGAAATTTATTCTGACCACCGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCTGCAGATCAAAAACATTCAGCAGAACGGGATCACACCAGAAGATATCAGCAAGGaa                                                                     >  2:43845/1‑150 (MQ=255)                                                                                                            acacCTTTGACTCTGTGAAATTTATTCTGACCACCGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCTGCAGATCAAAAACATTCAGCAGAACGGGATca                                                                                            >  1:18488/1‑99 (MQ=255)                                                                                                            acacCTTTGACTCTGTGAAATTTATTCTGACCACCGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCTGCAGATCAAAAACATTCAGCAGAACGGGATca                                                                                            <  2:18488/99‑1 (MQ=255)                                                                                                                         tgtgAAATTTATTCTGACCACCGCTCTCGCcggtggtcagaataaatttcacagagtcaaaggtgtgagcctccagcgcgatatgtttaccatcaagtccccacatgaagctgatgatcattccggcaatcgtcagaaa                                       <  2:18473‑M2/139‑110 (MQ=255)                                                                                                                         tgtgAAATTTATTCTGACCACCGCTCTCGCcggtggtcagaataaatttcacagagtcaaaggtgtgagcctccagcgcgatatgtttaccatcaagtccccacatgaagctgatgatcattccggcaatcgtcagaaa                                       >  1:18473‑M2/1‑30 (MQ=255)                                                                                                                                  tATTCTGACCACCGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCTGCAGATCAAAAACATTCAGCAGAACGGGATCACACCAGAAGATATCAGCAAGGAAATTAACGGGTATTACTGCTGTTTTTATACTGCCTTTTTCCTTATGGCgtg                   <  1:61936/150‑1 (MQ=255)                                                                                                                                        gACCACCGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCTGCAGATCAAAAACATTCAGCAGAACGGGATCACACCAGAAGATATCAGCAAGGAAATTAACGGGTATTACTGCTGTTTTTATACTGCCTTTTTCCTTATGGCGTGTTCTGc             <  1:65224/150‑1 (MQ=255)                                                                                                                                         accaccGCTCTCGCcggtggtcagaataaatttcacagagtcaaa                                                                                                                     >  1:88489‑M2/1‑14 (MQ=255)                                                                                                                                         accaccGCTCTCGCcggtggtcagaataaatttcacagagtcaaa                                                                                                                     <  2:88489‑M2/45‑32 (MQ=255)                                                                                                                                           caccGCTCTCGCcggtggtcagaataaatttcacagagtcaaaggtgtgagcctccagcgcgatatgtttaccatcaagtccccacatgaagctgatgatcattccggcaatcgtcagaaatacgcctgccagccagcgaatatggaaca          <  2:113396‑M2/150‑139 (MQ=255)                                                                                                                                            accGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCTGCAGATCAAAAACATTCAGCAGAACGGGATCACACCAGAAGATATCAGCAAGGAAATTAACGGGTATTACTGCTGTTTTTATACTGCCTTTTTCCTTATGGCGTGTTCTGCATgc         <  1:124329/150‑1 (MQ=255)                                                                                                                                                   tcGCCGGTGGTCTGCTGGCTGTTCCCCTGCAGATCAAAAACATTCAGCAGAACGGGATCACACCAGAAGATATCAGCAAGGAAATTAACGGGTATTACTGCTGTTTTTATACTGCCTTTTTCCTTATGGCGTGTTCTGCATGCGCACCAt  >  4:79289/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                   CCGGTTGTTCCATATTCGCTGGCTGGCAGGCGTATTTCTGACGATTGCCGGAATGATCATCAGCTTCATGTGGGGACTTGATGGTAAACATATCGCGCTGGAGGCTCACACCTTTGACTCTGTGAAATTTATTCTGACCACCGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCTGCAGATCAAAAACATTCAGCAGAACGGGATCACACCAGAAGATATCAGCAAGGAAATTAACGGGTATTACTGCTGTTTTTATACTGCCTTTTTCCTTATGGCGTGTTCTGCATGCGCACCAT  >  NC_000913_3_pae_tpiA/2074943‑2075238

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.