mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_tpiA | 4,295,976 | 0 | C | T | 27.9% | 237.9 / 100.5 | 140 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913_3_pae_tpiA | 4,051,259 | 0 | G | T | 20.5% | 222.6 / 44.8 | 83 | noncoding (224/245 nt) | csrC | CsrC sRNA sequesters CsrA, a carbon flux regulator |
| * | NC_000913_3_pae_tpiA | 4,051,262 | 0 | A | C | 20.2% | 184.9 / 54.0 | 84 | noncoding (227/245 nt) | csrC | CsrC sRNA sequesters CsrA, a carbon flux regulator |
| Marginal new junction evidence (lowest skew 10 of 570 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 3423422 | 104 (1.030) | 35 (0.350) | 28/236 | 5.4 | 25.5% | intergenic (+228/+1) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913_3_pae_tpiA | 4040687 = | NA (NA) | intergenic (+51/+219) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | NC_000913_3_pae_tpiA | = 1207805 | 77 (0.760) | 24 (0.270) | 23/208 | 5.6 | 27.0% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_pae_tpiA | = 1209602 | 63 (0.720) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_pae_tpiA | = 274419 | NA (NA) | 27 (0.280) | 23/230 | 6.5 | NA | coding (699/1017 nt) | insH1 | IS5 transposase and trans‑activator |
| ? | NC_000913_3_pae_tpiA | = 274423 | NA (NA) | coding (695/1017 nt) | insH1 | IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913_3_pae_tpiA | 3439574 = | 92 (0.910) | 21 (0.240) | 20/212 | 6.7 | 20.5% | intergenic (‑65/+42) | yhdN/rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| ? | NC_000913_3_pae_tpiA | 3439604 = | 82 (0.920) | intergenic (‑95/+12) | yhdN/rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 | |||||
| * | ? | NC_000913_3_pae_tpiA | 225456 = | 8 (0.080) | 23 (0.250) | 20/222 | 7.1 | 75.7% | noncoding (76/77 nt) | ileV | tRNA‑Ile |
| ? | NC_000913_3_pae_tpiA | = 3427056 | NA (NA) | intergenic (‑23/+20) | alaU/ileU | tRNA‑Ala/tRNA‑Ile | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3427065 | NA (NA) | 22 (0.240) | 19/222 | 7.4 | NA | intergenic (‑32/+11) | alaU/ileU | tRNA‑Ala/tRNA‑Ile |
| ? | NC_000913_3_pae_tpiA | = 3427068 | NA (NA) | intergenic (‑35/+8) | alaU/ileU | tRNA‑Ala/tRNA‑Ile | |||||
| * | ? | NC_000913_3_pae_tpiA | 164559 = | 113 (1.120) | 21 (0.220) | 19/222 | 7.4 | 18.7% | intergenic (+25/‑171) | hrpB/mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| ? | NC_000913_3_pae_tpiA | 289255 = | 78 (0.830) | intergenic (‑93/+46) | yagI/argF | CP4‑6 prophage; putative DNA‑binding transcriptional regulator/ornithine carbamoyltransferase 2, chain F; CP4‑6 prophage | |||||
| * | ? | NC_000913_3_pae_tpiA | 225456 = | 8 (0.080) | 18 (0.190) | 18/222 | 7.7 | 66.2% | noncoding (76/77 nt) | ileV | tRNA‑Ile |
| ? | NC_000913_3_pae_tpiA | 225477 = | 11 (0.120) | intergenic (+20/‑23) | ileV/alaV | tRNA‑Ile/tRNA‑Ala | |||||
| * | ? | NC_000913_3_pae_tpiA | = 715221 | 111 (1.100) | 20 (0.220) | 17/218 | 7.9 | 15.9% | intergenic (+23/‑191) | pgm/ybfP | phosphoglucomutase/lipoprotein |
| ? | NC_000913_3_pae_tpiA | = 715231 | 111 (1.210) | intergenic (+33/‑181) | pgm/ybfP | phosphoglucomutase/lipoprotein | |||||
| * | ? | NC_000913_3_pae_tpiA | = 4171812 | 78 (0.770) | 18 (0.190) | 17/224 | 8.1 | 20.5% | intergenic (+140/‑161) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| ? | NC_000913_3_pae_tpiA | = 4171817 | 67 (0.710) | intergenic (+145/‑156) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||