mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_tpiA | 4,295,976 | 0 | C | T | 20.3% | 149.2 / 33.4 | 74 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 162 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 1207805 | 44 (0.760) | 14 (0.270) | 14/246 | 3.9 | 25.2% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_pae_tpiA | = 1209602 | 44 (0.860) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_pae_tpiA | = 4542606 | 44 (0.760) | 14 (0.260) | 13/260 | 4.5 | 24.5% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_pae_tpiA | = 4542902 | 45 (0.830) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3648127 | 105 (1.810) | 17 (0.320) | 12/256 | 4.7 | 14.1% | noncoding (65/84 nt) | agrA | inactive antisense sRNA |
| ? | NC_000913_3_pae_tpiA | = 3648363 | 110 (2.060) | noncoding (70/84 nt) | agrB | antisense sRNA antitoxin for the DinQ toxin | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3269966 | 46 (0.790) | 14 (0.260) | 11/254 | 5.0 | 25.9% | intergenic (+364/+250) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| ? | NC_000913_3_pae_tpiA | = 3270196 | 38 (0.720) | intergenic (+594/+20) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component | |||||
| * | ? | NC_000913_3_pae_tpiA | 2700550 = | 50 (0.860) | 11 (0.220) | 10/240 | 5.0 | 20.7% | noncoding (31/77 nt) | ohsC | sRNA antisense regulator of shoB toxin |
| ? | NC_000913_3_pae_tpiA | 2700601 = | 41 (0.820) | intergenic (+5/+17) | ohsC/acpS | sRNA antisense regulator of shoB toxin/holo‑[acyl‑carrier‑protein] synthase 1 | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3269966 | 46 (0.790) | 12 (0.230) | 10/254 | 5.3 | 25.5% | intergenic (+364/+250) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| ? | NC_000913_3_pae_tpiA | = 3270083 | 28 (0.530) | intergenic (+481/+133) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3648127 | 105 (1.810) | 13 (0.240) | 10/256 | 5.4 | 11.6% | noncoding (65/84 nt) | agrA | inactive antisense sRNA |
| ? | NC_000913_3_pae_tpiA | = 3648132 | 101 (1.890) | noncoding (70/84 nt) | agrA | inactive antisense sRNA | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3269966 | 46 (0.790) | 10 (0.190) | 9/254 | 5.7 | 19.4% | intergenic (+364/+250) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| ? | NC_000913_3_pae_tpiA | = 3269970 | 41 (0.770) | intergenic (+368/+246) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component | |||||
| * | ? | NC_000913_3_pae_tpiA | 3950444 = | 124 (2.140) | 10 (0.180) | 9/264 | 5.9 | 7.5% | intergenic (+24/‑63) | ilvL/ilvX | ilvG operon leader peptide/uncharacterized protein |
| ? | NC_000913_3_pae_tpiA | 3950470 = | 130 (2.360) | intergenic (+50/‑37) | ilvL/ilvX | ilvG operon leader peptide/uncharacterized protein | |||||
| * | ? | NC_000913_3_pae_tpiA | = 4040686 | 90 (1.550) | 11 (0.200) +ATGT |
9/270 | 6.1 | 14.8% | intergenic (+50/+220) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913_3_pae_tpiA | = 4213071 | 40 (0.690) | noncoding (116/120 nt) | rrfE | 5S ribosomal RNA of rrnE operon | |||||