New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 2743678	42 (1.080)	5 (0.130)	5/272	4.7	11.1%	coding (54/483 nt)	yfiB	OM lipoprotein putative positive effector of YfiN activity
	?	NC_000913_3_pae_tpiA	= 2743679	40 (1.080)					coding (55/483 nt)	yfiB	OM lipoprotein putative positive effector of YfiN activity
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACGCCTCTGCGGAAAAATTACAAGAGCTTGCCGATCACAATATGTATCAGGCCAAACACCAGCGTGCCGAAAAGCTGGTGAGATAACAAGGATATATCGATATGATAAAGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_tpiA/2743524‑2743678 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gactggcAGCCAGTCAGTATTAGTGAGGTGAAAACCAGGGGTGCTACCAGGTGCTTTATCATATCGATATATCCTTGTTATCTCACCAGCTTTTCGGCACGCTGGTGTTTGGCCTGATACATATTGTGATCGGCAAGCTCTTGTAATTTTTCC  <  NC_000913_3_pae_tpiA/2743679‑2743534                                                                                                                                                                                                                                                                                                               ACGCCTCTGCGGAAAAATTACAAGAGCTTGCCGATCACAATATGTATCAGGCCAAACACCAGCGTGCCGAAAAGCTGGTGAGATAACAAGGATATATCGATATGATAAAGCACCTGGTAGCACCCCGCGTTTTCACCTCACTAATACTG                                                                                                                                                          >  2:128861/1‑149     CTCTGCGGAAAAATTACAAGAGCTTGCCGATCACAATATGTATCAGGCCAAACACCAGCGTGCCGAAAAGCTGGTGAGATAACAAGGATATATCGATATGATAAAGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTG                                                                                                                                                      >  1:62821/1‑149       CTGCGGAAAAATTACAAGAGCTTGCCGATCACAATATGTATCAGGCCAAACACCAGCGTGCCGAAAAGCTGGTGATATAACAAGGATATATCGATATGATAAAGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGC                                                                                                                                                    <  2:463353/149‑1       CTGCAGAAAAATTACAAGGGCTTGCCGATCACAATATGTATCAGGCCAAACACCAGCGTGCCGAAAAGCTGGTGAGATAACAAGGATATATCGATATGATAAAGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGC                                                                                                                                                    <  2:463503/149‑1                AATTACAAGAGCTTGCCGATCACAATATGTATCAGGCCAAACACCAGCGTGCCGAAAAGCTGGTGAGATAACAAGGATATATCGATATGATAAAGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCAGCCAGTCA                                                                                                                                           <  1:374431/149‑1                     CAAGAGCTTGCCGATCACAATATGTATCAGGCCAAACACCAGCGTGCCGAAAAGCTGGTGAGATAACAAGGATATATCGATATGATAAAGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCAGCCAGTCAGTATT                                                                                                                                      >  2:177200/1‑149                                                   GCCAAACACCAGCGTGCCGAAAAGCTGGTGAGATAACAAGGATATATCGATATGATAAAGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCAGCCAGTCAGTATTAGTGAGGTGAAAACCAGGGGTGCTACCAGG                                                                                                        <  1:177200/149‑1                                                                                                                                       ACCTCACTAATACTGACTGGCAGCCAGTCAGTATTAGTGAGGT                                                                                                                              >  1:365709/1‑43                                                                                                                                       ACCTCACTAATACTGACTGGCAGCCAGTCAGTATTAGTGAGGT                                                                                                                              <  2:365709/43‑1                                                                                                                                                         GGCAGCCAGTCAGTATTAGTGAGGTGAAAACCAGGGGTGCTACCAGGTGCTTTATCATATCGATATATCCTTGTTATCTCACCAGCTTTTCGGCACGCTGGTGTTTGGCCTGATACATATTGTGATCGGCAAGCTCTTGTAATTTTTCC  <  1:494251/149‑1                                                                                                                                                                                                                                                                                                               ACGCCTCTGCGGAAAAATTACAAGAGCTTGCCGATCACAATATGTATCAGGCCAAACACCAGCGTGCCGAAAAGCTGGTGAGATAACAAGGATATATCGATATGATAAAGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_tpiA/2743524‑2743678 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gactggcAGCCAGTCAGTATTAGTGAGGTGAAAACCAGGGGTGCTACCAGGTGCTTTATCATATCGATATATCCTTGTTATCTCACCAGCTTTTCGGCACGCTGGTGTTTGGCCTGATACATATTGTGATCGGCAAGCTCTTGTAATTTTTCC  <  NC_000913_3_pae_tpiA/2743679‑2743534

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.