New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 2743678	42 (1.080)	5 (0.130)	5/272	4.7	11.1%	coding (54/483 nt)	yfiB	OM lipoprotein putative positive effector of YfiN activity
	?	NC_000913_3_pae_tpiA	= 2743679	40 (1.080)					coding (55/483 nt)	yfiB	OM lipoprotein putative positive effector of YfiN activity
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGCGGAAAAATTACAAGAGCTTGCCGATCACAATATGTATCAGGCCAAACACCAGCGTGCCGAAAAGCTGGTGAGATAACAAGGATATATCGATATGATAAAGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAGTTTACTCCTGAGCAAGTCGCCGCTATGCAATCTTATGGATTTACTGAATCCGCCGGCGACTGGTCGCTGGGCTTATCAGATGCCATTCTGTTCGCAAAAAATGACTACAAATTGCTCCCGGAAAGCC  >  NC_000913_3_pae_tpiA/2743531‑2743826                                                                                                                                                     |                                                                                                                                                    tGCGGAAAAATTACAAGAGCTTGCCGATCACAATATGTATCAGTCCGAACACCAGCGTGCCGAAAAGCTGGTGAGATAACAAGGGTATATCGATATGATAAAGCACCTGGTAGCACCCCTGGGTTTCACCTCACTAATACTGACTGGCt                                                                                                                                                     >  1:673982/1‑149 (MQ=255)    ggAAAAATTACAAGAGCTTGCCGATCACAATATGTATCAGGCCAAACACCAGCGTGCCGAAAAGCTGGTGAGATAACAAGGATATATCGATATGATAAAGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGcc                                                                                                                                                  >  1:494251/1‑149 (MQ=255)         aaTTACAAGAGCTTGCCGATCACAATATGTATCAGGCCAAACACCAGCGTGCCGAAAAGCTGGTGAGATAACAAGGATATATCGATATGATAAAGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCAGCCAGTca                                                                                                                                             <  1:374431/149‑2 (MQ=255)         aaTTACAAGAGCCTGCCGATCACAATATGCATTAGGCCAAACACCACGGTGCCGAAAAGCTGGTGAGATAACAAGGATATATCGATATGATAAAGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTcc                                                                                                                                             <  1:127186/149‑1 (MQ=255)           ttACAAGAGCTTGCCGATCACAATATGTATCAGGCCAAACACCAGCGTGCCGAAAAGCTGGTGAGATAACAAGGATATATCGATATGATAAAGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTcccc                                                                                                                                           >  1:346547/1‑149 (MQ=255)              cAAGAGCTTGCCGATCACAATATGTATCAGGCCAAACACCAGCGTGCCGAAAAGCTGGTGAGATAACAAGGATATATCGATATGATAAAGCACCTGGTAGCCCCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCa                                                                                                                                        <  2:336670/149‑1 (MQ=255)              cAAGAGCTTGCCGATCACAATATGTATCAGGCCAAACACCAGCGTGCCGAAAAGCTGGTGAGATAACAAGGATATATCGATATGATAAAGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCAGCCAGTcagtatt                                                                                                                                        >  2:177200/1‑143 (MQ=255)               aaGAGCTTGCCGATCACAATATGTATCAGGCCAAACACCAGCGTGCCGAAAAGCTGGTGAGATAACAAGGATATATCGATATGATAAAGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAg                                                                                                                                       <  2:62821/149‑1 (MQ=255)               aaGAGCTTGCCGATCACAATATGTATCAGGCCAAACACCAGCGTGCCGAAAAGCTGGTGAGATAACAAGGATATATCGATATGATAAAGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAg                                                                                                                                       <  2:551383/149‑1 (MQ=255)                 gagCTTGCCGATCACAATATGTATCAGGCCAAACACCAGCGTGCCGAAAAGCTGGTGAGATAACAAGGATATATCGATATGATAAAGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAggg                                                                                                                                     <  2:346547/149‑1 (MQ=255)                    cTTGCCGATCACAATATGTATCAGGCCAAACACCAGCGTGCCGAAAAGCTGGTGAGATAACAAGGATATATCGATAGGATAAAGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGaaa                                                                                                                                  <  1:350554/149‑1 (MQ=255)                                aaTATGTATCAGGCCAAACACCAGCGTGCCGAAAAGCTGGTGAGATAACAAGGATATATCGATATGATAAAGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAGTTTACTCCTGa                                                                                                                      <  2:159029/149‑1 (MQ=255)                                      tATCAGGCCAAACACCAGCGTGCCGAAAAGCTGGTGAGATAACAAGGATATATCGATATGATAAAGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAGTTTACTCCTGAGCAAGt                                                                                                                <  1:568416/149‑1 (MQ=255)                                          aGGCCAAACACCAGCGTGCCGAAAAGCTGGTGAGATAACAAGGATATATCGATATGATAAAGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAGTTTACTCCTGAGCAAGTcgcc                                                                                                            >  2:434820/1‑149 (MQ=255)                                            gCCAAACACCAGCGTGCCGAAAAGCTGGTGAGATAACAAGGATATATCGATATGATAAAGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAGTTTACTCCTGAGCAAGTcgccgc                                                                                                          >  1:650899/1‑149 (MQ=255)                                                       gCGTGCCGAAAAGCTGGTGAGATAACAAGGATATATCGATATGATAAAGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAgg                                                                                                                                      >  1:315592/1‑110 (MQ=255)                                                       gCGTGCCGAAAAGCTGGTGAGATAACAAGGATATATCGATATGATAAAGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAgg                                                                                                                                      <  2:315592/110‑1 (MQ=255)                                                         gTGCCGAAAAGGCGGTGAGATAACAAGGATAAATCGATATGCTACAGCACTTGGTAGCACCCCGGGTTTTCACCTCACTAAGACTGACTGGGGGCCAGTCCCCTCAGAGAAAGTTTACTTCTGAGCAAGTCGCCGCTATGCAATCTTAt                                                                                             <  2:231711/149‑1 (MQ=255)                                                                    cTGGTGAGATAACAAGGATATATCGATATGATAAAGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAGTTTACTCCTGAGCAAGTCGCCGCTATGCAATCTTATGGATTTACTGa                                                                                  <  1:290869/149‑1 (MQ=255)                                                                     tGGTGAGATAACAAGGATATATCGATATGATAAAGCACCTGGTAGCACCCCTGGTTTTCACCTCCCTAATACTGACTGGCTGCCAGTCCCCCCAGGGAAAGGTTACTCCTGAGCACCTCCCCCCCATCCACTCTCATCGATTTCATGaa                                                                                 >  2:59030/1‑149 (MQ=255)                                                                              aaCAAGGATATATCGATATGATAAAGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTGAGGGAAAGTTTACTCCTGAGCAAGTCGCCGCTATGCAATCTTATGTATTTACTGAATCCGCCGGc                                                                        >  2:228707/1‑149 (MQ=255)                                                                                         atCGATATGATAAAGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAGTTTACTCCTGAGCAAGTCGCCGCTATGCAATCTTATGGATTTACTGAATCCGCCGACGACTGGTCGCt                                                             >  1:308580/1‑149 (MQ=255)                                                                                         atCGATATCATAAAGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAGTTTACTCCTGAGCAAGTCGCCGCTATGCAATCTTATGGATTTACTGAATCCGCCGGCGACTGGTCGCt                                                             <  1:562939/149‑1 (MQ=255)                                                                                            gATATGATAAAGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAGTTTACTCCTGAGCAAGTCGCCGCTATGCAATCTTATGGATTTACTGAATCCGCCGGCGACTGGTCGCTggg                                                          >  2:86968/1‑149 (MQ=255)                                                                                             atatGATAAAGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAGTTTAc                                                                                                                            >  1:43553/1‑82 (MQ=255)                                                                                             atatGATAAAGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAGTTTAc                                                                                                                            <  2:43553/82‑1 (MQ=255)                                                                                             atatGATAAAGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAGTTTACTCCTGAGCAAGTCGCCGCTATGCAATCTTATGGATTTACTGAATCCGCCGGCGACTGGTCGCTGGGc                                                         <  2:494251/149‑1 (MQ=255)                                                                                              tatGATAAAGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAGTTTACTCCTGAGCAAGTCGCCGCTATGCAATCTTATGGATTTACTGAATCCGCCGGCGACTGGTCGCTGGGCt                                                        >  2:368501/1‑149 (MQ=255)                                                                                                   caaggtaCCGGGGAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAGTTTACTCCTGAGCAAGTCGCCGCTATGCAATCTTATGGATTTACTGAATCCGCCGGCGACTGGTCGCTGGGCTTATCa                                                   <  2:650899/143‑1 (MQ=255)                                                                                                     aaGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAGTTTACTCCTGAGCAAGTCGCCGCTATGCAATCTTATGGATTTACTGAATCCGCCGGCGACTGGTCGCTGGGCTTATCAGa                                                 <  1:184955/149‑1 (MQ=255)                                                                                                       gCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAGTTTACTCCTGAGCAAGTCGCCGCTATGCAATCTTATGGATTTACTGAATCCGCCGGCGACTGGTCGCTGGGCTTATCAGATg                                               >  1:422229/1‑149 (MQ=255)                                                                                                            tGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAGTTTACTCCTGAGCCAGTCGCCGCTATGCAATCGTTTGGATTTACTGAATCCGCCGGCGACTGGTCGCTGGGATTATAACATGCCAta                                          >  2:472445/1‑148 (MQ=255)                                                                                                                     cccTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAGTTTACTCCTGAGCAAGTCGCCGCTATGCAATCTTATGGATTTACTGAATCCGCCGGCGACTGGTCGCTGGGCTTATCAGATGCCATTCTGTTCGCa                                 >  1:655656/1‑149 (MQ=255)                                                                                                                     cccTGGTTTTCACCTCACTAATACTGACTAGCTATGACTCTCCTCAGGGAAAGTTTACTCCTGAGCAAGTCGCCGCTATGCAATCTTATGGATTTACTGAATCCGCCGGCGACTGGTCGCTGGGCTTATCAGATGCCATTCTGTTCGCa                                 >  2:658654/1‑149 (MQ=255)                                                                                                                       cTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAGTTTACTCCTGAGCAAGTCGCCGCTATGCAATCTTATGGATTTACTGAATCCGCCAGCGACTGGTCGCTGGGCTTATCAGATGCCATTCTGTTCGCaaa                               >  1:320768/1‑149 (MQ=255)                                                                                                                             ttCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAGTTTACTCCTGAGCAAGTCGCCGCTATGCAATCTTATGGATTTACTGAATCCGCCGGCGACTGGTCGCTGGGCTTATCAGATGCCATTCTGTTCGCAAAAAATGa                         <  1:86968/149‑1 (MQ=255)                                                                                                                                aCCTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAGTTTACTCCTGAGCAAGTCGCCGCTATGCAATCTTATGGATTTACTGAATCCGCCGGCGACTGGTCGCTGGGCTTATCAGATGCCATTCTGTTCGCAAAAAAAAACTa                      >  2:565353/1‑149 (MQ=255)                                                                                                                                  cccACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAGTTTACTCCTGAGCAAGGCGCCGCTATGCAATCTTATGGATTTACTGAATCCGCCGGCGACTGGTCGCTGGGCTTATCAGATGCCATTCTGTTCGCAAAAAATGa                         <  2:470407/142‑1 (MQ=255)                                                                                                                                  cTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAGTTTACTCCTGAGCAAGTCGCCGCTATGCAATCTTATGGATTTACTGAATCCGCCGGCGACTGGTCGCTGGGCTTATCAGATGCCATTCTGTTCGCAAAAAATGa                         >  1:470407/1‑144 (MQ=255)                                                                                                                                        aaTACTGACTGGCTGCCAGTCCCCTCAGGGAAAGTTTACTCCTGAGCAAGTCGCCGCTATGCAATCTTATGGATTTACTGAATCCGCCGGCGACTGGTCGCTGGGCTTATCAGATGCCATTCTGTTCGCAAAAAATGACGACAAATTGc              >  1:143510/1‑149 (MQ=255)                                                                                                                                             tgactgGCTGCCAGTCCCCTCAGGGAAAGTTTACTCCTGAGCAAGTCGCCGCTATGCAATCTTATGGATTTACTGAATCCGCCGGCGACTGGTCGCTGGGCTTATCAGATGCCATTCTGTTCGCAAAAAATGACAACACATTGCTCCCg         >  1:88241/1‑149 (MQ=255)                                                                                                                                                 tgGCTGCCAGTCCCCTCAGGGAAAGTTTACTCCTGAGCAAGTCGCCGCTATGCAATCTTATGGATTTACTGAATCCGCCGGCGACTGGTCGCTGGGCTTATCAGATGCCATTCTGTTCGCAAAAAATGACTACAAATTGCTCCCGGaaa     <  1:368501/149‑1 (MQ=255)                                                                                                                                                 tgGCTGCCAGTCCCCTCAGGGAAAGTTTACTCCTGAGCAAGTCGCCGCTATGCAATCTTATGGATTTACTGAATCCGCCGGCGACTGGTCGCTGGGCTTATCAGATGCCATTCTGTTCGCAAAAAATGACTACAAATTGCTCCCGGaaa     <  1:119274/149‑1 (MQ=255)                                                                                                                                                    cTGCCAGTCCCCTCAGGGAAAGTTTACTCCTGAGCAAGTCGCCGCTATGCAATCTTATGGATTTACTAAATCCGCCGGCGACTGGTCGCTGGGCTTATCAGATGCCATTCTGTTCGCAAAAAATGACTACAAATTACTCCCGGCAAGcc  >  2:438178/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                    TGCGGAAAAATTACAAGAGCTTGCCGATCACAATATGTATCAGGCCAAACACCAGCGTGCCGAAAAGCTGGTGAGATAACAAGGATATATCGATATGATAAAGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAGTTTACTCCTGAGCAAGTCGCCGCTATGCAATCTTATGGATTTACTGAATCCGCCGGCGACTGGTCGCTGGGCTTATCAGATGCCATTCTGTTCGCAAAAAATGACTACAAATTGCTCCCGGAAAGCC  >  NC_000913_3_pae_tpiA/2743531‑2743826

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.