New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA 2700550 =25 (0.740)4 (0.140) 4/244 3.7 14.9% noncoding (31/77 nt) ohsC sRNA antisense regulator of shoB toxin
?NC_000913_3_pae_tpiA 2700601 = 24 (0.830)intergenic (+5/+17) ohsC/acpS sRNA antisense regulator of shoB toxin/holo‑[acyl‑carrier‑protein] synthase 1
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCGAGTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAATGCCTCGCCCCATAGCCGTAGCCGTGGTTTGCCGAGC  >  NC_000913_3_pae_tpiA/2700452‑2700750
                                                                                                                                                     |                                                                                                                                                     
tCGAGTTTTTATGCTAAAGATAGCAAGTTGTTTGGATAAGATAAGTACCCTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAACATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACAAGTTCGCGGGGTTTACTGCTTaaa                                                                                                                                                       >  2:130946/1‑150 (MQ=255)
             cgaaaGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAAGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACAAAGGATCTTTACTATATCGTCGGATTTACTTTTTAAAGAGAACGGtatta                                                                                                                                          >  2:568744/3‑150 (MQ=255)
                aaGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTAttt                                                                                                                                       >  2:287263/1‑150 (MQ=255)
                  gATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGATTTTACTTTTTAAAGAGAACGGAATTAttttt                                                                                                                                     >  1:272130/1‑150 (MQ=255)
                   aTTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTa                                                                                                                                    <  2:10506/150‑1 (MQ=255)
                    ttGCCAATTGCTGATGAAAGATAAGAAAACCGTTCCATAATAGCTGTAGCTGAGGGTGCATGCTGAACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTaa                                                                                                                                   <  1:568744/150‑1 (MQ=255)
                    ttGCAAGTTGCTTGTAAAAGCTAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAACATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTAACAGTTCGGGGGTTTTACTTTTTAAAGAGAAACGTATTAttttcac                                                                                                                                   >  2:12695/1‑147 (MQ=255)
                           ttGCGTGTAAAAGATAAGTACACTGATCCATAACCGCTGTTGTTGAGGGTGCATGCGGAACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCaa                                                                                                                            <  1:345891/150‑1 (MQ=255)
                               ttGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGCTCCGGGGTGTGACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCaataat                                                                                                                        >  1:492599/1‑150 (MQ=255)
                                            gTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGAACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACaa                                                                                                           <  2:2186/150‑1 (MQ=255)
                                                       cATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCg                                                                                                <  1:10710/150‑1 (MQ=255)
                                                              gCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTGTGAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCt                                                                                         <  1:412811/150‑1 (MQ=255)
                                                                               aTGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTa                                                                               <  1:446279/143‑1 (MQ=255)
                                                                               aTGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTa                                                                               >  2:446279/1‑143 (MQ=255)
                                                                                        aaaaTTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAAc                                                                                                                                  >  2:565910/1‑83 (MQ=255)
                                                                                        aaaaTTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAAc                                                                                                                                  <  1:565910/83‑1 (MQ=255)
                                                                                           aTTAAAGTTAAAAAGTAAACGCCCCTTTCCTTAGCATTTGGGGTGGTTTACTTTTTAAAGAGAACTTTATTAGTTTTAACTTTCAATGATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGcc                                                            <  2:525082/150‑1 (MQ=255)
                                                                                                    aaaaaGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTc                                                   <  1:287263/150‑1 (MQ=255)
                                                                                                    aaaaaGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTc                                                   >  1:267620/1‑150 (MQ=255)
                                                                                                      aaaGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCg                                                 >  2:546304/1‑150 (MQ=255)
                                                                                                                ccccGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTaa                                       <  1:148439/150‑1 (MQ=255)
                                                                                                                 cccGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAAt                                      <  1:34866/150‑1 (MQ=255)
                                                                                                                         ttACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCACCGCCCAGCTTTTCCGCCCGTTTTAATGCCTCGcc                              >  1:335628/1‑150 (MQ=255)
                                                                                                                              atttCGGGGTTTTTACTTTTTAAATAGAACCGTATTACTTTTAACGTTCAATAATTACCGTAGCAAAAGCATCGTGCCGCTCATCTGCCAGCGCTACATGCATATTTGCAACGCCTAGCTTTTCCGCCAGTTTTAATGCCTCGCCCCAta                         <  2:332867/148‑1 (MQ=255)
                                                                                                                                   gggggTTTTACTTGTTAAAGAGAACGATATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAATGCCTCGCCCCAtagccgt                    >  1:488787/1‑150 (MQ=255)
                                                                                                                                     gggTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAATGCCTCGCCCCAtcgccgtag                  >  1:323971/1‑150 (MQ=255)
                                                                                                                                        ttttACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAATGCCTCGCCCCAtagccgtagccg               >  2:474558/1‑150 (MQ=255)
                                                                                                                                         tttACTTTTTAAAGAGAACGGTATTAGTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGCCACATGCATATTTGCAACGCGCAGCTTTTCCGCCAGTTTTAATGCCTCGCCCCATagccgtagccgt              <  1:536554/150‑1 (MQ=255)
                                                                                                                                              tttttAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAATGCCTCGCCCCATAGCCGTAGCCGTGGttt         >  1:538082/1‑150 (MQ=255)
                                                                                                                                                    aaGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAATGCCTCGCCCCATAGCCGTAGCCGTGGTTTGCCGAg   <  1:34292/150‑1 (MQ=255)
                                                                                                                                                    aaGAGAACGGTATTATTCTTAACTTTCAAGACGTACCGTGGCACAAGCATAGTGCCGCGCATCTGCCAGGGTTACACTCATATTTGCAACGCCCAGTTTTTCCGCCAGTTTTAATGGCTCGCCCCATAGCCGTAGCCGTGGTTGGCCGa  <  2:322874/150‑2 (MQ=255)
                                                                                                                                                     agagAACGGTATTATTTTTAACTTTCACTAATTACCGTGACACAAGCATAGTGCCGCTCATCTGCCCGCGTTACATGCATATTTGCCACGCCAAGGTGTCTGGCCATGGTTAATGCCTCGCCTCTTGGCCGTAGCCGTGTTTTGCCGAGc  >  1:288661/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
TCGAGTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAATGCCTCGCCCCATAGCCGTAGCCGTGGTTTGCCGAGC  >  NC_000913_3_pae_tpiA/2700452‑2700750

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.