mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_tpiA | 3,440,982 | 0 | G | A | 27.9% | 114.2 / 54.5 | 79 | I16I (ATC→ATT) | rpoA | RNA polymerase, alpha subunit |
| * | NC_000913_3_pae_tpiA | 4,295,976 | 0 | C | T | 26.7% | 113.6 / 45.4 | 87 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913_3_pae_tpiA | 4,011,278 | 0 | T | G | 22.1% | 114.9 / 30.6 | 69 | L68R (CTT→CGT) | yigM | putative inner membrane EamA‑like transporter |
| Marginal new junction evidence (lowest skew 10 of 23 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 225281 | NA (NA) | 10 (0.190) | 7/274 | 5.8 | NA | noncoding (1511/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_pae_tpiA | = 225293 | NA (NA) | noncoding (1523/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913_3_pae_tpiA | 2729955 = | NA (NA) | 6 (0.110) | 6/272 | 6.2 | NA | noncoding (1203/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| ? | NC_000913_3_pae_tpiA | 2729972 = | NA (NA) | noncoding (1186/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_pae_tpiA | = 224973 | 17 (0.310) | 6 (0.110) | 6/272 | 6.2 | 26.9% | noncoding (1203/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_pae_tpiA | 2729972 = | NA (NA) | noncoding (1186/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_pae_tpiA | = 4549702 | NA (NA) | 5 (0.090) | 5/270 | 6.6 | NA | noncoding (4/36 nt) | REP345 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP345 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913_3_pae_tpiA | = 4549734 | NA (NA) | noncoding (36/36 nt) | REP345 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP345 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913_3_pae_tpiA | 4542598 = | 53 (0.960) | 4 (0.080) | 4/266 | 7.1 | 8.1% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_pae_tpiA | 4542912 = | 41 (0.790) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3638470 | 73 (1.320) | 4 (0.080) | 4/264 | 7.1 | 5.3% | coding (829/1500 nt) | pitA | phosphate transporter, low‑affinity; tellurite importer |
| ? | NC_000913_3_pae_tpiA | = 3638477 | 76 (1.470) | coding (836/1500 nt) | pitA | phosphate transporter, low‑affinity; tellurite importer | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3943624 | NA (NA) | 4 (0.080) | 4/270 | 7.2 | 17.4% | intergenic (+114/‑80) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_pae_tpiA | = 3943642 | 20 (0.360) | intergenic (+132/‑62) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon | |||||
| * | ? | NC_000913_3_pae_tpiA | 2888334 = | NA (NA) | 4 (0.080) | 4/270 | 7.2 | NA | noncoding (1/37 nt) | REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913_3_pae_tpiA | 2888367 = | NA (NA) | noncoding (34/37 nt) | REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913_3_pae_tpiA | 349375 = | 55 (0.990) | 5 (0.090) | 4/270 | 7.2 | 8.0% | coding (694/891 nt) | prpB | 2‑methylisocitrate lyase |
| ? | NC_000913_3_pae_tpiA | 349410 = | 62 (1.180) | coding (729/891 nt) | prpB | 2‑methylisocitrate lyase | |||||
| * | ? | NC_000913_3_pae_tpiA | = 4168257 | 41 (0.740) | 4 (0.080) | 3/264 | 7.7 | 10.4% | intergenic (+141/‑31) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
| ? | NC_000913_3_pae_tpiA | = 4168279 | 31 (0.600) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||