New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA = 32857413 (0.230)3 (0.240) 3/244 1.4 35.4% coding (264/792 nt) agaD N‑acetylgalactosamine‑specific enzyme IID component of PTS
?NC_000913_3_pae_tpiA = 3285798 8 (0.630)coding (321/792 nt) agaD N‑acetylgalactosamine‑specific enzyme IID component of PTS

AGATAACCTCGAATTTATTAATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCGACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGCGGGAATTTGCTCATCATTTGCCAGCCAGGGAAAC  >  NC_000913_3_pae_tpiA/3285651‑3285867
                                                                                          |                                                                                                                              
aGATAACCTCGAATTTATTAATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCGACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGcc                                                                                   <  1:180545/136‑1 (MQ=255)
                      acccacccGAATCTGGTCGGCTTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCGACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGCCGATgcggttttct                                                             <  2:134280‑M2/136‑11 (MQ=255)
                                        ggcttCCTGATGGGGTTATAAAAAAAGAAAGAAGAAAAAAGAGAAAACCGCGACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGa                                           >  1:20108/4‑136 (MQ=255)
                                                      gTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCatcgccaatcccggc                                                                                                                 >  1:125379‑M1/1‑37 (MQ=255)
                                                      gTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCatcgccaatcccggc                                                                                                                 <  2:125379‑M1/52‑16 (MQ=255)
                                                                                 agaAAACCGCatcggcaatcccggcgattgggccaaacagtgccactttgaggcctttaatggtgtcgcggttttctcctttttcttccatcgaaattaataaccccatcaggaagccgaccagattcgggtgggt  <  2:134280‑M1/136‑127 (MQ=255)
                                                                                 agaAAACCGCGACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGCGGGAGTTTGCTCATCCTTTGCCAACCAGGGAAAc  >  2:217296/1‑136 (MQ=255)
                                                                                          |                                                                                                                              
AGATAACCTCGAATTTATTAATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCGACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGCGGGAATTTGCTCATCATTTGCCAGCCAGGGAAAC  >  NC_000913_3_pae_tpiA/3285651‑3285867

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.