| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 3285741 | 3 (0.230) | 3 (0.240) | 3/244 | 1.4 | 35.4% | coding (264/792 nt) | agaD | N‑acetylgalactosamine‑specific enzyme IID component of PTS |
| ? | NC_000913_3_pae_tpiA | = 3285798 | 8 (0.630) | coding (321/792 nt) | agaD | N‑acetylgalactosamine‑specific enzyme IID component of PTS | |||||
ACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCGACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGCGGGAATTTGCTCATCATTTGCCAGCCAGGGAAACCTGCTGGGGCCGATTCTATTTTTCGCCGTTTACCTGCT > NC_000913_3_pae_tpiA/3285673‑3285905 | acccacccGAATCTGGTCGGCTTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCGACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGCCGATgcggttttct < 2:134280‑M2/136‑11 (MQ=255) ggcttCCTGATGGGGTTATAAAAAAAGAAAGAAGAAAAAAGAGAAAACCGCGACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGa > 1:20108/4‑136 (MQ=255) agaAAACCGCGACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGCGGGAGTTTGCTCATCCTTTGCCAACCAGGGAAAc > 2:217296/1‑136 (MQ=255) acCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGCGGGAATTTGCTCATCATTTGCCAGCCAGGGAACCCTGCTGGGGCCGa > 2:26182/1‑136 (MQ=255) acCATTAAAGGCCTCAAAATAGCACAAAAAAACCCAATCACCGGGATTAGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGCGGGAATTTGCTCATCATTTGCCAGCCAGGGAAACCTGCTGGGGCCGa > 1:37113/1‑136 (MQ=255) actGGCACTGTCTGGTGCACTCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGCGGGAATTTGCTCATCATTTTCCAGCCAGGGAAACCTGCTCGGGCCCAACGTAATTTTCCCCGtt > 2:110020/3‑136 (MQ=255) gCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGCGGGAATTTGCtcat > 1:242096/1‑82 (MQ=255) gCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGCGGGAATTTGCtcat < 2:242096/82‑1 (MQ=255) tGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGCGGGAATTTGCTCCTAATTTGCCAGCCAGGGAACACTGCTGGGGCGGGTCATATTTTTCGCCGATTACCtctt > 2:221300/1‑133 (MQ=255) gCCGGGATTGGCGATgcggttttctcctttttcttccatcgaaattaataac > 1:125379‑M2/1‑15 (MQ=255) gCCGGGATTGGCGATgcggttttctcctttttcttccatcgaaattaataac < 2:125379‑M2/52‑38 (MQ=255) | ACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCGACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGCGGGAATTTGCTCATCATTTGCCAGCCAGGGAAACCTGCTGGGGCCGATTCTATTTTTCGCCGTTTACCTGCT > NC_000913_3_pae_tpiA/3285673‑3285905 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |