| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_tpiA | 3570872 = | 54 (1.130) | 4 (0.090) | 4/274 | 6.7 | 7.9% | noncoding (3570872/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | 3570898 = | 41 (0.900) | noncoding (3570898/4641682 nt) | repeat_region | repeat region | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCATTATGACCGGCGTGCAGCAGCGGGTTATCTTTAAACTC > NC_000913_3_vch_tpiA/3570726‑3571013 | cagTTCCAGCGCGGTAATGGCCAATTGTTTCAAATAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGTGGCATAAATGCTGGtgctgc < 2:184976/149‑1 (MQ=255) ccAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGATCTCGACCGGGATCTCCGGGTGTAATGATGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCAc > 1:446938/1‑149 (MQ=255) cAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACg > 2:11999/1‑149 (MQ=255) aGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCGGATGCCCGAGGGCTATATAAGTGCCACGGCTCTCGACCGGGATATCAGGGTGCAAGTACGTTAATCCTTTTACATAGGCTTCATAAATGATGGTGCTGCCCCACgg > 2:511435/1‑149 (MQ=255) gcgGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGt < 2:743065/149‑1 (MQ=255) gTAATGCCCAATTGTTTCAAATAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGACACGGATCTCGACCGGGATCTCCGCGTGCCAGTACGTTAATCCATGAACATGGGCTTCATACATGATGGTGCTGCCCCCCGGAGTgtg > 2:301884/1‑147 (MQ=255) aaTGCCCAATTGTTTCAAATAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGATAATCCTTTGACATGGGCTTCATAAATGATGCTACTGCCCCACGGCGTGcccg > 2:318427/1‑149 (MQ=255) ccAATTGTTTCAAATAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACCGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCggg > 2:459421/1‑149 (MQ=255) cAATTGTTTCAAATAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACg > 2:807983/1‑134 (MQ=255) cAATTGTTTCAAATAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACg < 1:807983/134‑1 (MQ=255) tttCAGATAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGCTCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGCCCTGGGCTGCATAAATGATGCTCCTACCCCACGACGTTCGCGCCcggggacgat > 1:726044/1‑143 (MQ=255) aaaTAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTc > 1:540406/1‑149 (MQ=255) aaTAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTcc > 1:756657/1‑149 (MQ=255) tAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCa < 1:506491/149‑1 (MQ=255) tAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCCTCCCa > 2:125063/1‑149 (MQ=255) ttGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTc > 1:733463/1‑149 (MQ=255) ccGGATGCCCGAGGGCTTTATAAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGt < 2:795331/112‑1 (MQ=255) ccGGATGCCCGAGGGCTTTATAAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGt > 1:795331/1‑112 (MQ=255) gaaTGCCCGAGGGCGTTAGTCGTGCCACGGCTCTCTACCGGGATCTCCGTGTGCAAGTACCTTAATCCGTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCTTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAac < 1:314391/147‑1 (MQ=255) gggCTTTATAAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACg < 1:831265/149‑1 (MQ=255) gCTTTATAAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCa > 2:737848/1‑149 (MQ=255) tttATAAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACCCAtt > 2:749229/1‑149 (MQ=255) taAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCgg > 1:841424/1‑149 (MQ=255) aaGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGgc < 1:4118/149‑1 (MQ=255) ccACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTCCGCATTGCGGCGCAAt > 1:647574/1‑149 (MQ=255) cGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATggc < 2:756657/149‑1 (MQ=255) ggATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATggcg < 1:11999/149‑1 (MQ=255) gATCTCGACCGGGATCTACTGCAGCAAGTACGTTAATGCTTTGACATGGGCGTTAGATATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAAACACCACTACGCATTTCGGCGCAATggcgg > 2:708842/1‑149 (MQ=255) gATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCGTAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGAt > 2:187422/1‑149 (MQ=255) tctcCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAg > 2:268728/1‑149 (MQ=255) tGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCgcggc < 1:722031/66‑1 (MQ=255) tGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCgcggc > 2:722031/1‑66 (MQ=255) aaGTACGTTAATCCTTTGGCATGGGCTTCATAAAGGATGTGGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCAtt < 1:231157/149‑1 (MQ=255) gTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCATTAt < 2:841424/149‑1 (MQ=255) cGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCATTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCATTATGAc < 2:95514/149‑1 (MQ=255) gTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGGCAGGTTCATTATGAcc > 1:137625/1‑149 (MQ=255) gTTAATCCTTTGACATAGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCAATATGAcc > 1:736008/1‑149 (MQ=255) ttAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCATTATGACCg > 2:799157/1‑149 (MQ=255) ttAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGCTGTCGCGATAGTCAGGTCCATTATGACCg > 2:729464/1‑149 (MQ=255) aTCCCTTGACAAGGGCTTCAGAAATGAGGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCAGCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCATTATGACCGGCg < 2:79794/149‑1 (MQ=255) ccTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTCCTCCGCAATGGCGGCGTTGTCGCGATTGTCAGGGTCATTCTTACCGGCGTg > 2:300551/1‑149 (MQ=255) cTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCggg < 2:278239/53‑1 (MQ=255) cTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCggg > 1:278239/1‑53 (MQ=255) ttGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTTATCAACCACCACTACGCATTTCTGCGCAATGGCGTCGTTGTCGCGATAGTCAGGTTCATTATGACCGGCGTgcag < 1:497929/149‑1 (MQ=255) ggCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCATTATGACCGGCGTGCAGCAGCGGGt > 1:255942/1‑149 (MQ=255) gCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCGTCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCTCGCTATTCAGGTGCATATTGACCGGCGTGCAGCAGCGGGtt > 1:208596/1‑149 (MQ=255) gCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCATTATGACCGGCGTGCAGCAGCGGGtt > 1:61855/1‑149 (MQ=255) taTAAATGGTGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTTATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCTCGATAGTCAGGTTCATTATGGCCGGCGTGCAGCAGCGGGTTATCt < 2:401160/148‑1 (MQ=255) cATAAATGGTGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCATTATGACCGGCGTGCAGCAGCGGGTTATCt < 2:726613/149‑1 (MQ=255) aTAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCATTATGACCGGCGTGCAGCAGCGGGTTATCtt > 1:45616/1‑149 (MQ=255) tAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCATTATTCCCGGCGGGCCGCACCGGGTTAACttt > 2:618194/1‑149 (MQ=255) atgatgGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGGTGTCGCGATAGTCAGGTTCATTATGACCGGCGTGCAGCAGCGGGTTATCTTTaaa < 1:434273/149‑1 (MQ=255) tgatgGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGGTCATTCTGACCGGCGTGCAGCAGCGGGTGATCTTTAAAc > 1:486118/1‑149 (MQ=255) atgGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCATTATGACCGGCGTGCAGCAGCGGGTTATCTTTAAACTc > 2:327462/1‑149 (MQ=255) | CAGTTCCAGCGCGGTAATGCCCAATTGTTTCAAATAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCATTATGACCGGCGTGCAGCAGCGGGTTATCTTTAAACTC > NC_000913_3_vch_tpiA/3570726‑3571013 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |