New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	3570872 =	54 (1.130)	4 (0.090)	4/274	6.7	7.9%	noncoding (3570872/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	3570898 =	41 (0.900)					noncoding (3570898/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAATAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCATTATGACCGGCGTGCAGCAGCGGGTTATCTTTAAACTCCCCGTCAATTTGCCGCGCGCAAGGATCAATCAA  >  NC_000913_3_vch_tpiA/3570757‑3571046                                                                                                                                              |                                                                                                                                                     aaaTAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTc                                                                                                                                               >  1:540406/1‑149 (MQ=255)  aaTAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTcc                                                                                                                                              >  1:756657/1‑149 (MQ=255)    tAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCa                                                                                                                                            <  1:506491/149‑1 (MQ=255)    tAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCCTCCCa                                                                                                                                            >  2:125063/1‑149 (MQ=255)       ttGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTc                                                                                                                                         >  1:733463/1‑149 (MQ=255)                   gaaTGCCCGAGGGCGTTAGTCGTGCCACGGCTCTCTACCGGGATCTCCGTGTGCAAGTACCTTAATCCGTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCTTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAac                                                                                                                             <  1:314391/147‑1 (MQ=255)                             gggCTTTATAAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACg                                                                                                                   <  1:831265/149‑1 (MQ=255)                               gCTTTATAAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCa                                                                                                                 >  2:737848/1‑149 (MQ=255)                                 tttATAAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACCCAtt                                                                                                               >  2:749229/1‑149 (MQ=255)                                     taAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCgg                                                                                                           >  1:841424/1‑149 (MQ=255)                                      aaGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGgc                                                                                                          <  1:4118/149‑1 (MQ=255)                                           ccACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTCCGCATTGCGGCGCAAt                                                                                                     >  1:647574/1‑149 (MQ=255)                                              cGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATggc                                                                                                  <  2:756657/149‑1 (MQ=255)                                               ggATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATggcg                                                                                                 <  1:11999/149‑1 (MQ=255)                                                gATCTCGACCGGGATCTACTGCAGCAAGTACGTTAATGCTTTGACATGGGCGTTAGATATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAAACACCACTACGCATTTCGGCGCAATggcgg                                                                                                >  2:708842/1‑149 (MQ=255)                                                            gATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCGTAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGAt                                                                                    >  2:187422/1‑149 (MQ=255)                                                              tctcCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAg                                                                                  >  2:268728/1‑149 (MQ=255)                                                                         aaGTACGTTAATCCTTTGGCATGGGCTTCATAAAGGATGTGGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCAtt                                                                       <  1:231157/149‑1 (MQ=255)                                                                           gTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCATTAt                                                                     <  2:841424/149‑1 (MQ=255)                                                                              cGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCATTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCATTATGAc                                                                  <  2:95514/149‑1 (MQ=255)                                                                               gTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGGCAGGTTCATTATGAcc                                                                 >  1:137625/1‑149 (MQ=255)                                                                               gTTAATCCTTTGACATAGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCAATATGAcc                                                                 >  1:736008/1‑149 (MQ=255)                                                                                ttAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCATTATGACCg                                                                >  2:799157/1‑149 (MQ=255)                                                                                ttAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGCTGTCGCGATAGTCAGGTCCATTATGACCg                                                                >  2:729464/1‑149 (MQ=255)                                                                                   aTCCCTTGACAAGGGCTTCAGAAATGAGGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCAGCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCATTATGACCGGCg                                                             <  2:79794/149‑1 (MQ=255)                                                                                     ccTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTCCTCCGCAATGGCGGCGTTGTCGCGATTGTCAGGGTCATTCTTACCGGCGTg                                                           >  2:300551/1‑149 (MQ=255)                                                                                        ttGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTTATCAACCACCACTACGCATTTCTGCGCAATGGCGTCGTTGTCGCGATAGTCAGGTTCATTATGACCGGCGTgcag                                                        <  1:497929/149‑1 (MQ=255)                                                                                                ggCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCATTATGACCGGCGTGCAGCAGCGGGt                                                >  1:255942/1‑149 (MQ=255)                                                                                                 gCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCGTCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCTCGCTATTCAGGTGCATATTGACCGGCGTGCAGCAGCGGGtt                                               >  1:208596/1‑149 (MQ=255)                                                                                                 gCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCATTATGACCGGCGTGCAGCAGCGGGtt                                               >  1:61855/1‑149 (MQ=255)                                                                                                     taTAAATGGTGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTTATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCTCGATAGTCAGGTTCATTATGGCCGGCGTGCAGCAGCGGGTTATCt                                           <  2:401160/148‑1 (MQ=255)                                                                                                     cATAAATGGTGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCATTATGACCGGCGTGCAGCAGCGGGTTATCt                                           <  2:726613/149‑1 (MQ=255)                                                                                                      aTAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCATTATGACCGGCGTGCAGCAGCGGGTTATCtt                                          >  1:45616/1‑149 (MQ=255)                                                                                                       tAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCATTATTCCCGGCGGGCCGCACCGGGTTAACttt                                         >  2:618194/1‑149 (MQ=255)                                                                                                          atgatgGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGGTGTCGCGATAGTCAGGTTCATTATGACCGGCGTGCAGCAGCGGGTTATCTTTaaa                                      <  1:434273/149‑1 (MQ=255)                                                                                                           tgatgGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGGTCATTCTGACCGGCGTGCAGCAGCGGGTGATCTTTAAAc                                     >  1:486118/1‑149 (MQ=255)                                                                                                             atgGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCATTATGACCGGCGTGCAGCAGCGGGTTATCTTTAAACTc                                   >  2:327462/1‑149 (MQ=255)                                                                                                                       cccACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGCTAGTCAGGTTCATTATGACCGACGTGCAGCAGCGGGTTATCTTTAAACTCCCCGTCAAtt                         >  2:696673/1‑149 (MQ=255)                                                                                                                          aCGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCATTATGACCGGCGTGCAGCAGCGGGTTATCTTTAAACTCCCCGTCAATTTGc                      <  2:386852/149‑1 (MQ=255)                                                                                                                               gTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCATTATGACCGGCGTGCAGCAGCGGGTTATCTTCAAACTCCCCGTCAATTTCCcgcgc                 >  2:358510/1‑149 (MQ=255)                                                                                                                                   gcggcgGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCATTATGACCGGCGTGCAGCAGCGGGTTATCTTTAAACTCCCCGTCAATTTGCCGCGCGCaa             <  1:125063/149‑1 (MQ=255)                                                                                                                                    cgtctgggCATCAGCTTCCTAGTCATAGTGATCAACCACCACTACGCATTTCAGTGCAATGGTGGCGTTGTCGCGATAGTCAGGTTCATTATGACCGGCGTTCAGCAGCGGGTTATTTTTAAACTCCCCGTCAATTTGCCGCGCGCAAg            <  1:118785/144‑1 (MQ=255)                                                                                                                                        ggggCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCATTATGACCGGCGTg                                                           >  2:673053/1‑98 (MQ=255)                                                                                                                                        ggggCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCATTATGACCGGCGTg                                                           <  1:673053/98‑1 (MQ=255)                                                                                                                                           gCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCAGCGTTGTCGCGATAGTCAGGTTCATTATGACCGGCGTGCAGCAGCGGGTTATCTTTAAACTCCCCGTCAATTTGCCGCGCGCAAGGatcaat     >  1:590288/1‑149 (MQ=255)                                                                                                                                           gCACCATCTTCCCAGTCAGAGTGATCAACCACCACTACGCATTGCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCATTATGACCGGCGGGCAGCAGCGGGTTATCTTTAAACGCCCCGTCAATTTGCCGCGCGCAAGGatcaat     <  2:38689/149‑1 (MQ=255)                                                                                                                                              tcatcTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGCCGTTGTCGCGATAGTCAGGTTCATTATGACCGGCGTGCAGCAGCGGGTTATCTTTAAACTCCCCGTCAATTTGCCGCGCGCAAGGataactccg  >  2:839573/1‑142 (MQ=255)                                                                                                                                              |                                                                                                                                                     AAATAGTTGATCATCACCGGATGCCCGAGGGCTTTATAAGTGCCACGGATCTCGACCGGGATCTCCGGGTGCAAGTACGTTAATCCTTTGACATGGGCTTCATAAATGATGGTGCTGCCCCACGGCGTGCGCGGCGGGGCATCATCTTCCCAGTCATAGTGATCAACCACCACTACGCATTTCGGCGCAATGGCGGCGTTGTCGCGATAGTCAGGTTCATTATGACCGGCGTGCAGCAGCGGGTTATCTTTAAACTCCCCGTCAATTTGCCGCGCGCAAGGATCAATCAA  >  NC_000913_3_vch_tpiA/3570757‑3571046

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.