New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	2790661 =	25 (0.650)	4 (0.110)	4/276	5.1	14.0%	noncoding (2790661/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	2790677 =	25 (0.670)					noncoding (2790677/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGTAAATCAGGTGGTTAACAATCTGGTTATGCTCCGGCGCAAGGCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_vch_tpiA/2790708‑2790661 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggaGCATAACCAGATTGTTAACCACCTGATTTACCCCATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGTGACCGTCGGGCCAAAC  >  NC_000913_3_vch_tpiA/2790677‑2790788                                                                                                                                                                  GGTAAATCAGGTGGTTAACAATCTGGTTATGCTCCGGCGCAAGGCGGAGCATAACCAGATTGTTAACCACCTGATTTACCCCATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCAT                                            <  2:632517/118‑1 GGTAAATCAGGTGGTTAACAATCTGGTTATGCTCCGGCGCAAGGCGGAGCATAACCAGATTGTTAACCACCTGATTTACCCCATTCCCGACCCGGCAAGGCCGTTTTTGGGCGTTCAT                                            >  1:632517/1‑118                               GCTCCGGCGCAAGGCGGAGCATAACCAGATTGTTAACCACCTGATTTACCCCATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGTGACCGTCGGGCCAAAC  >  1:249972/1‑130                               GCTCCGGCGCAAGGCGGAGCATAACCAGATTGTTAACCACCTGATTTACCCCATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGTGACCGTCGGGCCAAAC  <  2:249972/130‑1                                                                                                                                                                  GGTAAATCAGGTGGTTAACAATCTGGTTATGCTCCGGCGCAAGGCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_vch_tpiA/2790708‑2790661 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggaGCATAACCAGATTGTTAACCACCTGATTTACCCCATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGTGACCGTCGGGCCAAAC  >  NC_000913_3_vch_tpiA/2790677‑2790788

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.