New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	2790661 =	25 (0.650)	4 (0.110)	4/276	5.1	14.0%	noncoding (2790661/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	2790677 =	25 (0.670)					noncoding (2790677/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAAAACGGCGTGGTGATACGTACCCGTCAGGGCGGCGAATATGAAGCATCAACGCTGATTAGCTGTTCCGGGCTGATGGCTGACCGGCTGGTGAAAATGCTCGGACTCGAACCGGGCTTTATCATCTGCCCGTTCCGTGGCGAGTATTTCCGCCTTGCGCCGGAGCATAACCAGATTGTTAACCACCTGATTTACCCCATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGTGACCGTCGGGCCAAACGCGGTGCTGGCTT  >  NC_000913_3_vch_tpiA/2790513‑2790801                                                                                                                                                     |                                                                                                                                             aaaaaCGGCGTGGTGATACGTACCCGTCAGGGCGGCGAATATGAAGCATCAACGCTGATTAGCTGTTCCGGGCTGATGGCTGACCGGCTGGTGAAAATGCTCGGACTCGAACCGGGCTTTATCATCTGCCCGTTCCGTGGCGAGTAttt                                                                                                                                              <  1:448151/149‑1 (MQ=255)                aTACGTACCCGTTAGGGCGGCGATTTTGATGCTTCGACGCTGGTTGGGTGTTCCGGGCTGATGGCTGACCGGCTGGTGAAAATGCTCGGACTCGAACCGGGCTTTATCATCTGCCCGTTCCGTGGCGAGTATTTCCGCCTTGCGCCGGa                                                                                                                               <  1:275715/149‑1 (MQ=255)                  aCGTACCCGTCAGGGCGGCGAATATGAAGCATCAACGCTGATTAGCTGTTCCGGGCTGATGGCTGACCGGCTGGTGAAAATGCTCGGACTCGAACCGGGCTTTATCATCTGCCCGTTCCGTGGCGAGTATTTCCGCCTTGCGCCGGAGc                                                                                                                             >  1:465657/1‑149 (MQ=255)                   cGTACCCGTCAGGGCGGCGAATATGAAGCATCAACGCTGATTAGCTGTTCCGGGCTGATGGCTGACCGGCTGGTGAAAATGCTCGGACTCGAACCGGGCTTTATCATCTGCCCGTTCCGTGGCGAGTATTTCCGCCTTGCGCCGGAGCa                                                                                                                            >  2:641737/1‑149 (MQ=255)                        ccGTCAGGGCGGCGAATATGAAGCATCAACGCTGATTAGCTGTTCCGGGCTGATGGCTGACCGGCTGGTGAAAATGCTCGGACTCGAACCGGGCTTTATCATCTGCCCGTTCCGTGGCGAGTATTTCCGCCTTGCGCCGGAGCATAAcc                                                                                                                       >  1:92545/1‑149 (MQ=255)                                      aaTATGAAGCGTCAACGCTGATTAGCTGTTCCGGGCTGATGGCTGACCGGCTGGTGAAAATGCTCGGACTCGAACCGGGCTTTATCATCTGCCCGTTCCGTGGCGAGTATTTCCGCCTTGCGCCGGAGCATAACCAGATTGTTAaccac                                                                                                         <  2:497029/149‑1 (MQ=255)                                                           ttAGCTGTGCCGGGCTGATGGCTGACCCGCTGGTGAAAATGCGCGGACTCGAACCGGGCTTTATCATCTGCCCTTTCCGTGGCGAGTATTTCCGCCTTGCGCCGGAGCATAACCAGATTGTTAACCACCTGATTTACCCCATTCCCGAc                                                                                    <  1:598507/149‑1 (MQ=255)                                                               cggTTCCGGGCTGATGGCTCACCGGCTGGTGAAAATGCTCGGACTCGAACCGGGCTTTATCATCTCCCCGTTCCATGGCGAGTATTTCCACCTTGCGCCGGAGCACAACCAGATTGTTAACCACCTCATTTCCACCATTCGCGCCCCgg                                                                                >  2:225414/3‑149 (MQ=255)                                                                  ttCCGGGCTGATGGCTGACCGGCTGGTGAAAATGCTCGGACTCGAACCGGGCTTTATCATCTGCCCGTTCCGTGGCGAGTATTTCCGCCTTGCGCCGGAGCATAACCAGATTGTTAACCACCTGATTTACCCCATTCCCGACCCGGCaa                                                                             <  1:81947/149‑1 (MQ=255)                                                                                 tGAACGGCTGGTGAAAATGCTCGGACTCGAACCGGGCTTTATCATCTGCCCGTTCCGTGGCGAGTATTTCCGCCTTGCGCCGGAGCATAACCAGATTGTTAACCACCTGATTTACCCCATTCCCGGCCCGGCAATGCCGTTTTTggggg                                                              >  2:384762/1‑147 (MQ=255)                                                                                      ggCTGGTGAAAATGCTCGGACTCGAACCGGGCTTTATCATCTGCCCGTTCCGTGGCGAGTATTTCCGCCTTGCGCCGGAGCATAACCAGATTGTTAACCACCTGATTTACCCCATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCAt                                                         <  1:518362/149‑1 (MQ=255)                                                                                                   gCTCGGACTCGAACCGGGCTTTATCATCTGCCCGTTCCGTGGCGAGTATTTCCGCCTTGCGCCGGAGCATAACCAGATTGTTAACCACCTGATTTACCCCATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGa                                            >  1:373706/1‑149 (MQ=255)                                                                                                    cccggtttCGAACCGGGCTTTATCATCTGCCCGTTCCGTGGCGAGTATTTCCGCCTTGCGCCGGAGCATAACCAGATTGTTACCCACCTGCTTTACCCCATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGAt                                           <  1:224940/142‑1 (MQ=255)                                                                                                    cTCGGACTCGAACCGGGCTTTATCATCTGCCCGTTCCGTGGCGAGTATTTCCGCCTTGCGCCGGAGCATAACCAGATTGTTAACCACCTGATTTACCCCATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGAt                                           <  1:399248/149‑1 (MQ=255)                                                                                                    cTCGGACTCGAACCAGGCTTTATCAGCCGCCCGACCCGTGGCTAGCATTCCTGCGGGGCGCCGTGGCATAAGCAGTTTGGTAACGACCTGAGTTACCCCAGTCCCTGGCCGGCAATGCCGTGTTTGGGCGTTCATCTCACCCGCATGAt                                           <  2:229423/149‑1 (MQ=255)                                                                                                                 cGGGCTTTATCATCTGCCCGTTCCGTGGCGAGTATTTCCGCCTTGCGCCGGAGCATAACCAGATTGTTAACCACCTGATTTAcccc                                                                                             >  2:672986/1‑86 (MQ=255)                                                                                                                 cGGGCTTTATCATCTGCCCGTTCCGTGGCGAGTATTTCCGCCTTGCGCCGGAGCATAACCAGATTGTTAACCACCTGATTTAcccc                                                                                             <  1:672986/86‑1 (MQ=255)                                                                                                                    gCTTTATCATCTGCCCGTTCCGTGGCGAGTATTGCCGCCGTGCGCCGGAGCATAACCAGATTGTTAACCACCTGATTTACCCCACTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCCCCCGCATGATCGACGGCAGCGTGAcc                           <  1:234244/149‑1 (MQ=255)                                                                                                                      tttATCATCTGCCCGTTCCGTGGCGAGTATTTCCGCCTTGCGCCGGAGCATAACCAGATTGTTAACCACCTGATTTACCCCATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGTGTGACCGt                         >  1:187914/1‑149 (MQ=255)                                                                                                                         atcatcTGCCCGGTCCGTGGCGTGTAGTTCCGCCTTGCGCCGGAGCATAACCAGATTGTTAACCACCTGATTTACCCCATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGTGACCGTCgg                      <  1:69212/149‑1 (MQ=255)                                                                                                                             tcTGCCCGTTCCGTGGCGAGTATTTCCGCCTTGCGCCGGAGCATAACCAGATTGTTAACCACCTGATTTACCCCATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGTGACCGTCGGGCCa                  >  2:297845/1‑149 (MQ=255)                                                                                                                                    gTTCCGTGGCGAGTATTTCCGCCTTGCGCCGGAGCATAACCAGATTGTTAACCACCTGATTTACCCCATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGTGACCGTCGGGCCAAACGCgg           <  1:203741/149‑1 (MQ=255)                                                                                                                                        cGTGGCGAGTATTTCCGCCTTGCGCCGGAGCATAACCAGATTGTTAACCACCTGATTTACCCCATTCCCGACCCGGCAATGCCGTTTTTGGGCGTGCATCTCCCCCGCATGCTCGACGGCAGCGTGACCGTCGGGCCAAACGCGGTGCt       >  1:148003/1‑149 (MQ=255)                                                                                                                                         gTGGGGAGTATTTCCGCCTCGCGCCGGAGCATAACCAGATTGTTAACCACCTGATTTACCCCATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGTGACCGTCGGGCCAAACGCGGTGCTg      <  2:204747/149‑1 (MQ=255)                                                                                                                                             cGAGTATTTCCGCCTTGCGCCGGAGCATAACCAGATTGTTAACCACCGGATTTACCCCATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGTGACCGTCGGGCCAAACGCGGTGCTGGCtt  <  2:637574/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                             AAAAACGGCGTGGTGATACGTACCCGTCAGGGCGGCGAATATGAAGCATCAACGCTGATTAGCTGTTCCGGGCTGATGGCTGACCGGCTGGTGAAAATGCTCGGACTCGAACCGGGCTTTATCATCTGCCCGTTCCGTGGCGAGTATTTCCGCCTTGCGCCGGAGCATAACCAGATTGTTAACCACCTGATTTACCCCATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGTGACCGTCGGGCCAAACGCGGTGCTGGCTT  >  NC_000913_3_vch_tpiA/2790513‑2790801

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.