mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 1,157,593 | C→T | intergenic (+19/‑276) | ycfH → / → ptsG | putative metal‑dependent hydrolase YcfH/glucose‑specific PTS enzyme IIBC component |
| MC JC | 1,299,499 | Δ1,199 bp | insH21 | insH21 | |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,533,585 | C→T | intergenic (+205/‑179) | cysK → / → ptsH | O‑acetylserine sulfhydrylase A/phosphocarrier protein HPr |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| MC JC | 3,815,859 | Δ82 bp | [rph] | [rph] | |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423765–3424234 | 3424546–3424238 | 5–782 | 18 [16] | [17] 20 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| * | * | ÷ | NC_000913 | 3486105 | 3486784 | 680 | 18 [17] | [16] 19 | crp | crp |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 17 (0.270) | 58 (1.040) | 39/226 | 0.2 | 82.3% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 10 (0.180) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 17 (0.270) | 41 (0.730) | 35/226 | 0.4 | 76.7% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 10 (0.180) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | 2288919 = | NA (NA) | 41 (0.640) | 26/258 | 1.2 | 51.9% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 4118287 | 38 (0.590) | intergenic (‑197/‑228) | glpF/zapB | glycerol facilitator/cell division factor ZapB | |||||
| * | ? | NC_000913 | = 2290113 | NA (NA) | 48 (0.750) | 33/258 | 0.7 | 58.5% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 4118284 = | 34 (0.530) | intergenic (‑194/‑231) | glpF/zapB | glycerol facilitator/cell division factor ZapB | |||||
| * | ? | NC_000913 | 2514274 = | NA (NA) | 36 (0.580) | 27/252 | 1.1 | 43.4% | noncoding (2/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | = 2601789 | 47 (0.750) | coding (589/618 nt) | hyfA | hydrogenase 4 component A | |||||