mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,170,734 | 0 | G | T | 26.2% | 122.7 / 34.6 | 80 | intergenic (‑51/+257) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 104,042 | 0 | A | T | 22.4% | 127.2 / 11.4 | 49 | intergenic (+81/‑150) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| * | CP009273 | 4,402,598 | 0 | C | G | 22.2% | 231.5 / 10.8 | 83 | S132C (TCT→TGT) | yjfM | DUF1190 family protein |
| * | CP009273 | 2,178,908 | 0 | T | G | 20.8% | 197.6 / 10.7 | 77 | intergenic (‑128/+95) | thiM/rcnR | hydoxyethylthiazole kinase/transcriptional repressor of rcnA |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1203246 = | 106 (1.000) | 8 (0.090) | 8/242 | 11.1 | 8.7% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 75 (0.800) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 4532507 | 79 (0.750) | 7 (0.070) | 7/256 | 12.1 | 7.4% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | = 4532803 | 102 (1.030) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | 4532499 = | 86 (0.810) | 5 (0.050) | 5/256 | 13.4 | 5.1% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | 4532813 = | 104 (1.050) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | 483237 = | 99 (0.940) | 4 (0.040) | 4/264 | 14.3 | 3.8% | coding (1246/3363 nt) | mscK | mechanosensitive channel protein, intermediate conductance, K+ regulated |
| ? | CP009273 | 483273 = | 110 (1.080) | coding (1282/3363 nt) | mscK | mechanosensitive channel protein, intermediate conductance, K+ regulated | |||||
| * | ? | CP009273 | = 1633328 | 72 (0.680) | 5 (0.050) | 3/270 | 15.3 | 6.3% | coding (457/498 nt) | rzpQ | Rz‑like protein, Qin prophage |
| ? | CP009273 | = 1633363 | 79 (0.760) | coding (422/498 nt) coding (229/255 nt) |
rzpQ rzoQ |
Rz‑like protein, Qin prophage putative Rz1‑like lipoprotein, Qin prophage |
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