breseq  version 0.35.4  revision f352f80f4bc9 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,157,514	0	C	T	73.9%	32.4 / 11.5	23	T246T (ACC→ACT)	ycfH	putative metal‑dependent hydrolase YcfH
*	NC_000913	2,099,274	0	C	.	73.3%	17.3 / 16.6	15	coding (340/1167 nt)	ugd	UDP‑glucose 6‑dehydrogenase
*	NC_000913	3,308,791	0	G	A	71.9%	47.1 / 19.4	32	A45V (GCA→GTA)	nlpI	lipoprotein NlpI
*	NC_000913	3,202,530	0	T	C	45.2%	11.6 / 50.9	42	F214L (TTT→CTT)	cca	fused tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase and phosphatase
*	NC_000913	4,296,060	0	C	T	41.1%	34.4 / 66.6	56	intergenic (+266/+376)	gltP/yjcO	glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO
*	NC_000913	1,333,636	0	A	.	38.1%	42.0 / 24.2	21	coding (2589/2598 nt)	topA	DNA topoisomerase 1
*	NC_000913	127,708	0	A	G	33.3%	19.0 / 15.2	21	intergenic (+121/‑204)	aceF/lpd	pyruvate dehydrogenase, E2 subunit/lipoamide dehydrogenase
*	NC_000913	1,247,148	0	C	T	31.6%	17.4 / 12.3	19	A77T (GCT→ACT)	treA	periplasmic trehalase
*	NC_000913	3,743,118	0	A	G	28.6%	53.8 / 21.3	35	E129G (GAA→GGA)	yiaK	2,3‑diketo‑L‑gulonate reductase
*	NC_000913	2,563,071	0	T	G	28.1%	43.2 / 27.9	32	L183W (TTG→TGG)	yffP	CPZ‑55 prophage; uncharacterized protein YffP
*	NC_000913	4,213,670	0	A	G	23.1%	72.7 / 18.8	39	intergenic (+53/+10)	yjaA/yjaB	stress response protein/putative N‑acetyltransferase YjaB
*	NC_000913	784,248	0	C	A	20.7%	72.6 / 12.9	29	L192L (CTG→CTT)	zitB	Zn(2(+))/Cd(2(+))/Ni(2(+))/Cu(2(+)) exporter