| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 2,737,118 | IS1 (+) +8 bp | intergenic (+235/‑29) | bamD → / → raiA | outer membrane protein assembly factor BamD/stationary phase translation inhibitor and ribosome stability factor |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1978503 = | NA (NA) | 26 (0.890) | 22/160 | 0.4 | 100% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 2737118 = | 0 (0.000) | intergenic (+235/‑36) | bamD/raiA | outer membrane protein assembly factor BamD/stationary phase translation inhibitor and ribosome stability factor | |||||
| * | ? | NC_000913 | = 1979270 | NA (NA) | 16 (0.550) | 14/160 | 1.0 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 2737125 | 0 (0.000) | intergenic (+242/‑29) | bamD/raiA | outer membrane protein assembly factor BamD/stationary phase translation inhibitor and ribosome stability factor | |||||
GCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1979195‑1979270‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGAATTCAGCATACCGTTCCTGATGTCAAAATGTGTGATGAAAATCTCATAATTTTGTCACTTTTTGTCAACG < NC_000913/2737125‑2737052 GCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGTGAA < 1:55084/81‑1GCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGTGAA < 2:637700/81‑1 AGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGTGAATTCAG > 2:470788/1‑80 AGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGTGAATTCAGCATACCG > 1:470769/1‑81 AAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGTGAATTCAGCATACCGTT < 1:55049/81‑1 GCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGTGAATTCAGCATACCGTTCC < 2:50800/81‑1 GCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGTGAATTCAGCATACCGTTCC < 2:55045/81‑1 CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGTGAATTCAGCATACCGTTCCTGATGTCAAAAT < 2:55051/81‑1 AAACACCATCATACACTAAATCAGTAAGTTGACAGCATCACCGTGAATTCAGCATACCGTTCCTGATGTCAAAATGTGTGA < 2:337932/81‑1 AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGTGAATTCAGCATACCGTTCCTGATGTCAAAATGTGTGAT > 1:470806/1‑81 AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGTGAATTCAGCATACCGTTCCTGATGTCAAAATGTGTGAT < 2:193179/81‑1 TCATACACTAAATCAGTAAGTTGGCAGCATCACCGTGAATTCAGCATACCGTTCCTGATGTCAAAATGTGTGATGAAAATC < 1:3744/81‑1 AGTTGGCAGCATCACCGTGAATTCAGCATACCGTTCCTGATGTCAAAATGTGTGATGAAAATCTCATAATTTTGTCACTTT > 1:470805/1‑81 GGCAGCATCACCGTGAATTCAGCATACCGTTCCTGATGTCAAAATGTGTGATGAAAATCTCATAATTTTGTCACTTTTTGT > 2:470804/1‑81 GCATCACCGTGAATTCAGCATACCGTTCCTGATGTCAAAATGTGTGATGAAAATCTCATAATTTTGTCACTTTTTGTCAAC < 1:50826/81‑1 CATCACCGTGAATTCAGCATACCGTTCCTGATGTCAAAATGTGTGATGAAAATCTCATAATTTTGTCACTTTTTGTCAACG < 2:337951/81‑1 GCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1979195‑1979270‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGAATTCAGCATACCGTTCCTGATGTCAAAATGTGTGATGAAAATCTCATAATTTTGTCACTTTTTGTCAACG < NC_000913/2737125‑2737052 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |