| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 2,737,118 | IS1 (+) +8 bp | intergenic (+235/‑29) | bamD → / → raiA | outer membrane protein assembly factor BamD/stationary phase translation inhibitor and ribosome stability factor |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1978503 = | NA (NA) | 26 (0.890) | 22/160 | 0.4 | 100% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 2737118 = | 0 (0.000) | intergenic (+235/‑36) | bamD/raiA | outer membrane protein assembly factor BamD/stationary phase translation inhibitor and ribosome stability factor | |||||
| * | ? | NC_000913 | = 1979270 | NA (NA) | 16 (0.550) | 14/160 | 1.0 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 2737125 | 0 (0.000) | intergenic (+242/‑29) | bamD/raiA | outer membrane protein assembly factor BamD/stationary phase translation inhibitor and ribosome stability factor | |||||
AAAGATTCGTTGACAAAAAGTGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAACAAATGGAAATTACTCCGGCCATC > NC_000913/2737045‑2737201 | aaaGATTCGTTGACAAAAAGTGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGGATGCTGAATTCAc < 1:470803/81‑1 (MQ=255) tggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCAcc > 1:470823‑M2/72‑80 (MQ=255) agctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGa > 1:470836‑M2/69‑81 (MQ=255) gctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGAc < 2:193250‑M2/14‑1 (MQ=255) ctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACg < 1:3659‑M2/15‑1 (MQ=255) cGTTGACAAAAAGTGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatg < 2:337951‑M2/81‑8 (MQ=255) gTTGACAAAAAGTGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgc < 1:50826‑M2/81‑9 (MQ=255) gcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACgg > 1:470821‑M2/65‑80 (MQ=255) gcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACgg > 1:470827‑M2/65‑80 (MQ=255) catgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACggg < 2:50748‑M2/17‑1 (MQ=255) catgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACggg > 1:470825‑M2/64‑80 (MQ=255) atgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACggg > 1:470833‑M2/63‑79 (MQ=255) atgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGaa < 1:57740‑M2/19‑1 (MQ=255) atgacaaagtcatcgggcattatccgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACggg > 2:470832‑M2/63‑79 (MQ=255) aCAAAAAGTGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgcc > 2:470804‑M2/1‑69 (MQ=255) aaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACaa < 2:57722‑M2/24‑1 (MQ=255) aaaGTGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaact > 1:470805‑M2/1‑65 (MQ=255) agtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACaa > 1:470834‑M2/56‑79 (MQ=255) agtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACaa > 2:470838‑M2/56‑79 (MQ=255) agtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAaga < 1:54952‑M2/26‑1 (MQ=255) gggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTaaaa > 1:470831‑M2/49‑81 (MQ=255) gaTTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatga < 1:3744‑M2/81‑35 (MQ=255) atcaCACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtt < 2:193179‑M2/81‑42 (MQ=255) atcaCACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtt > 1:470806‑M2/1‑40 (MQ=255) tcaCACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgtcaacttactgatttagtgtatgatggtgttt < 2:337932‑M2/81‑43 (MQ=255) cactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTAcc < 1:54947‑M2/54‑1 (MQ=255) ctatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAg < 1:50739‑M2/56‑1 (MQ=255) aTTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgagg < 2:55051‑M2/81‑49 (MQ=255) atcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGc > 1:470828‑M2/24‑80 (MQ=255) aataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGcaaa < 2:3654‑M2/60‑1 (MQ=255) gttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAACAAATg > 1:470835‑M2/16‑81 (MQ=255) ggAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggc < 2:55045‑M2/81‑61 (MQ=255) ggAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggc < 2:50800‑M2/81‑61 (MQ=255) aaCGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggctt < 1:55049‑M2/81‑63 (MQ=255) gtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAACAAATGGAAAt > 2:470840‑M2/10‑80 (MQ=255) cGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttct > 1:470769‑M2/1‑17 (MQ=255) ttaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAACAAATGGAAATTACTc > 1:470826‑M2/6‑81 (MQ=255) ccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAACAAATGGAAATTACTCCgg < 2:470807‑M2/79‑1 (MQ=255) ccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAACAAATGGAAATTACTCCgg > 1:470841‑M2/3‑81 (MQ=255) cTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttct > 2:470788‑M2/1‑10 (MQ=255) gAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAACAAATGGAAATTACTCCGGcc < 1:637787/81‑1 (MQ=255) ttCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagc < 2:637700‑M2/81‑77 (MQ=255) ttCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagc < 1:55084‑M2/81‑77 (MQ=255) | AAAGATTCGTTGACAAAAAGTGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAACAAATGGAAATTACTCCGGCCATC > NC_000913/2737045‑2737201 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |