Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_000913 | 3,917,504 | Δ28 bp | coding (735‑762/864 nt) | atpG ← | ATP synthase F1 complex subunit gamma |
Missing coverage evidence... | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_000913 | 3917504 | 3917531 | 28 | 42 [0] | [0] 42 | atpG | ATP synthase F1 complex subunit gamma |
New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 3917503 | 0 (0.000) | 39 (1.130) | 37/154 | 0.1 | 100% | coding (763/864 nt) | atpG | ATP synthase F1 complex subunit gamma |
? | NC_000913 | 3917532 = | 0 (0.000) | coding (734/864 nt) | atpG | ATP synthase F1 complex subunit gamma |
GGCCTGACGAGCTTTGTTGTATACCAACTGCAGCTCTTTAATCAGGCTGCCGCCATTGTCGGTCGCGGCTTTCATCGCCACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACGCCCTGATAAACCTGAGATTCGACATAACGACGCAGCAGG > NC_000913/3917453‑3917612 | cgatctcggtgagttcctgagtaatgctggcctgacgagctttgttgtataccaactgcagctctttaatcaggctgccac < 2:842312‑M2/2‑1 (MQ=255) gatctcggtgagttcctgagtaatgctggcctgacgagctttgttgtataccaactgcagctctttaatcaggctgccac > 2:842361‑M2/79‑80 (MQ=255) tctcggtgagttcctgagtaatgctggcctgacgagctttgttgtataccaactgcagctctttaatcaggctgccacca > 2:842368‑M2/77‑80 (MQ=255) ggtgagttcctgagtaatgctggcctgacgagctttgttgtataccaactgcagctctttaatcaggctgccACCATa < 2:842313‑M2/6‑1 (MQ=255) ggtgagttcctgagtaatgctggcctgacgagctttgttgtataccaactgcagctctttaatcaggctgccACCATACgg > 2:842358‑M2/73‑81 (MQ=255) gtgagttcctgagtaatgctggcctgacgagctttgttgtataccaactgcagctctttaatcaggctgccACCATACggg > 2:842372‑M2/72‑81 (MQ=255) gtgagttcctgagtaatgctggcctgacgagctttgttgtataccaactgcagctctttaatcaggctgccACCATACggg < 2:842314‑M2/10‑1 (MQ=255) gagttcctgagtaatgctggcctgacgagctttgttgtataccaactgcagctctttaatcaggctgccACCATACGggcg > 2:842367‑M2/70‑81 (MQ=255) agttcctgagtaatgctggcctgacgagctttgttgtataccaactgcagctctttaatcaggctgccACCATACGggcgg > 1:842356‑M2/69‑81 (MQ=255) gttcctgagtaatgctggcctgacgagctttgttgtataccaactgcagctctttaatcaggctgccACCATACGggcggc < 1:842315‑M2/14‑1 (MQ=255) ctgagtaatgctggcctgacgagctttgttgtataccaactgcagctctttaatcaggctgccACCATACGGGCGGCCTGc > 2:842373‑M2/64‑81 (MQ=255) ctgagtaatgctggcctgacgagctttgttgtataccaactgcagctctttaatcaggctgccACCATACGGGCGGCCTGc > 1:842365‑M2/64‑81 (MQ=255) agtaatgctggcctgacgagctttgttgtataccaactgcagctctttaatcaggctgccACCATACGGGCGGCCTGCTc < 2:842316‑M2/20‑1 (MQ=255) ctggcctgacgagctttgttgtataccaactgcagctctttaatcaggctgccACCATACGGGCGGCCTGCTCGCTGGcc < 1:842317‑M2/27‑1 (MQ=255) tgacgagctttgttgtataccaactgcagctctttaatcaggctgccACCATACGGGCGGCCTGCTCGCTGGCCAGGtttt > 1:842357‑M2/48‑81 (MQ=255) acgagctttgttgtataccaactgcagctctttaatcaggctgccACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTc > 1:842355‑M2/46‑80 (MQ=255) gagctttgttgtataccaactgcagctctttaatcaggctgccACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAAc > 1:842371‑M2/44‑81 (MQ=255) agctttgttgtataccaactgcagctctttaatcaggctgccACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAAcc < 2:842318‑M2/39‑1 (MQ=255) agctttgttgtataccaactgcagctctttaatcaggctgccACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAAc > 2:842362‑M2/43‑80 (MQ=255) gctttgttgtatatcaactgcagctctttaatcaggctgccACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCa < 2:842319‑M2/40‑1 (MQ=255) ttgttgtataccaactgcagctctttaatcaggctgccACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACGc > 1:842390‑M2/39‑81 (MQ=255) gttgtataccaactgcagctctttaatcaggctgccACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACGccc > 2:842366‑M2/37‑81 (MQ=255) ttgtataccaactgcagctctttaatcaggctgccACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACGCCCt > 1:842381‑M2/36‑81 (MQ=255) tataccaactgcagctctttaatcaggctgccACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACGCCCTGa < 1:842328‑M2/48‑1 (MQ=255) tataccaactgcagctctttaatcaggctgccACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACGCCCTGAt < 1:842320‑M2/49‑1 (MQ=255) taccaactgcagctctttaataaggctgccACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACGCCCTGATaa < 2:842323‑M2/51‑1 (MQ=255) aactgcagctctttaatcaggctgccACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACGCCCTGATAAACCt > 1:842379‑M2/27‑81 (MQ=255) gcagctctttaatcaggctgccACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACGCCCTGATAAACCt > 1:842376‑M2/23‑77 (MQ=255) agctctttaatcaggctgccACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACGCCCTGATAAACCTGAGAtt > 1:842370‑M2/21‑81 (MQ=255) agctctttaatcaggctgccACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACGCCCTGATAAACCTGAGAtt < 1:842321‑M2/61‑1 (MQ=255) gctctttaatcaggctgccACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACGCCCTGATAAACCTGAGATTc < 2:842322‑M2/62‑1 (MQ=255) ctctttaatcaggctgccACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACGCCCTGATAAACCTGAGATTCg < 2:842326‑M2/63‑1 (MQ=255) taatcaggctgccACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACGCCCTGATAAACCTGAGATTCGACAt < 2:842325‑M2/67‑1 (MQ=255) taatcaggctgccACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACGCCCTGATAAACCTGAGATTCGACAt < 1:842327‑M2/67‑1 (MQ=255) aatcaggctgccACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACGCCCTGATAAACCTGAGATTCGACATaa > 2:842386‑M2/13‑81 (MQ=255) atcaggctgccACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACGCCCTGATAAACCTGAGATTCGACATAac > 2:842394‑M2/12‑81 (MQ=255) atcaggctgccACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACGCCCTGATAAACCTGAGATTCGACATAac < 2:842324‑M2/70‑1 (MQ=255) ctgccACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACGCCCTGATAAACCTGAGATTCGACATAacgacg > 1:842387‑M2/6‑79 (MQ=255) tgccACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACGCCCTGATAAACCTGAGATTCGACATAACGACgcag > 2:842375‑M2/5‑81 (MQ=255) gccACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACGCCCTGATAAACCTGAGATTCGACATAACGACgcagc > 1:842389‑M2/4‑81 (MQ=255) ccACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACGCCCTGATAAACCTGAGATTCGACATAACGACgcagca < 2:842329‑M2/79‑1 (MQ=255) accaTACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACGCCCTGATAAACCTGAGATTCGACATAACGACGCAGCAgg > 1:842392/1‑81 (MQ=255) | GGCCTGACGAGCTTTGTTGTATACCAACTGCAGCTCTTTAATCAGGCTGCCGCCATTGTCGGTCGCGGCTTTCATCGCCACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACGCCCTGATAAACCTGAGATTCGACATAACGACGCAGCAGG > NC_000913/3917453‑3917612 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |